Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1685 340 2e-88 seq1724 331 1e-85 seq1399 120 3e-22 seq1162 107 2e-18 seq1115 102 9e-17 >seq1685 Length=141252148 Score = 340 bits (376), Expect = 2e-88 Identities = 644/938 (69%), Gaps = 20/938 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTC-ATTAGAATTCATTACTCCCATTT 18670 ||| || ||| |||| || | ||||||||||| || | | || || |||||||| Sbjct 47457289 TTAGAAGTCAGCATCTAAGGTAAAAGAATTCTGTTGGACTTGA---CACCACTCCCATCC 47457233 Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 | ||||| | | | ||||| | |||||||| ||||| |||| | ||| ||| | Sbjct 47457232 TCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 47457178 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 |||||| |||||||| | | ||| | | || | || || | ||| | | | Sbjct 47457177 ACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 47457118 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 |||| || || ||||| | ||| ||| ||||| | | |||||||| || || | | Sbjct 47457117 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 47457058 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAATA 18909 | ||||| | || || || || ||||| |||||||| | || || | ||||| | || Sbjct 47457057 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCAT-TGATAATTATT 47456999 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAA 18969 | ||||| || || | || || || ||||| |||||||| || |||||| Sbjct 47456998 TCTCTCACTCTCTCCTCCGATAGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAA 47456939 Query 18970 TCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATC 19029 ||| |||| ||||| ||||| || || |||||||| ||||| || | ||||||||| Sbjct 47456938 TCAG--TGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGGCATC 47456881 Query 19030 AGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCT 19089 ||||||| ||| || | ||| ||||| || ||||| || | |||||||| || |||||| Sbjct 47456880 AGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCCTTCT 47456821 Query 19090 ACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTC 19149 ||||| || || || || | | ||| ||||| | || || || | |||||| | Sbjct 47456820 ACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCCAATCCAGCGC 47456761 Query 19150 AGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATAC 19209 | |||||||| |||||||| || ||||| ||||| || || || | ||| | ||| | Sbjct 47456760 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGA--AGAGAA 47456703 Query 19210 ATACGCTCATCTGT---ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 || | || ||| | |||||| | || | || || | | ||| |||||||| ||| Sbjct 47456702 ATTCCCT-TTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 47456644 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || || ||||| || || || || || || || ||||| | |||||||| ||||| ||| Sbjct 47456643 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACT 47456584 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 | ||||| || |||||||||||||| ||||| ||||| || |||||||| || Sbjct 47456583 ATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAA 47456524 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATA 19446 | | ||||| ||||||| | | || | | | || | | ||||| | ||| Sbjct 47456523 ACCAGAACATGGGATATAAAATATCTCTC-CCCGGGCTTCAGGGATTCCCAGTGCCAATG 47456465 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 || || || | || || || || ||||| || |||||||| || || |||||||| Sbjct 47456464 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 47456405 Query 19507 TTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| ||| || | || | || ||||| || ||||| Sbjct 47456404 TGCCAGATACCATGGTACTCGATGGGAAAGATGACAAA 47456367 Score = 210 bits (232), Expect = 2e-49 Identities = 389/564 (69%), Gaps = 9/564 (2%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| | ||| |||| ||||| || || || | | |||| | |||||||| | Sbjct 130531236 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGG 130531177 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 ||||||||||||||| ||| || | ||||||||| | ||||| || ||||||||||| Sbjct 130531176 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 130531117 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 | | ||| ||| ||||| || | | | |||||||| || | || || || | Sbjct 130531116 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 130531057 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| || ||||| | |||||||| || ||||| ||||| || || | | ||| Sbjct 130531056 ATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAACGGCATTG 130530998 Query 19201 AATAGATACATACGC--TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 | ||||| || | | || | |||||||| |||||| || || | | ||| | | Sbjct 130530997 A--AGATAAATTCCCTTTCTTTGTTATCTTTA--ATATGCGTCAATAAGGAGACTATTTA 130530942 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 | || ||||| || ||||||||||| || || || || || || || | |||||| | Sbjct 130530941 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 130530882 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 |||| ||||| | |||| ||| ||||| ||||||| | ||| ||||||| |||| Sbjct 130530881 TCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTG 130530822 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAA 19437 |||| || || | | ||| ||||||| | ||| || | | || | | || ||| Sbjct 130530821 CAAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAG-GCTTCAGGGCTTCCCAG 130530763 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | ||| || || || | || || || | | |||| ||||| ||||| |||| Sbjct 130530762 TGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAGACCTCTACTTTC 130530703 Query 19498 TTATACATGTTCCATATATCACGA 19521 |||||||| ||||| |||||| || Sbjct 130530702 TTATACATTTTCCAAATATCATGA 130530679 >seq1724 Length=455154 Score = 331 bits (366), Expect = 1e-85 Identities = 642/939 (68%), Gaps = 18/939 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| |||| || | ||||||||| ||| || || || || |||||||| Sbjct 265363 TTAGAAGTCAGCATCTAAGGTAAAAGAATTTTCTG--TTGGACTTGACACCACTCCCATC 265420 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || | |||| | |||||||| ||||| |||| | ||| ||| Sbjct 265421 CTCTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTC 265475 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| |||||||| | | ||| | | || | || || | ||| | Sbjct 265476 TCCATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAGCCTA 265535 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| | || ||||| | ||| || ||||| | | |||||||| || || | Sbjct 265536 AGTCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGC 265595 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || | ||| | || || || || ||||| |||||||| | || || | ||||| || Sbjct 265596 TTCATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCAT-TGATA--ATT 265652 Query 18910 GATACA---ACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 | | | ||||| || || || || | || | ||| |||||||| || ||| Sbjct 265653 GTTTCTCTCACTCTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCA 265711 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||||| |||| ||||| ||||| || || | |||||| ||||| || | |||||| Sbjct 265712 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGC 265771 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||||||||| ||| || | ||| ||||| || ||||| || || |||||||| || ||| Sbjct 265772 ATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCT 265831 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 |||||||| ||||| || || | | ||| ||||| |||| || || | |||||| Sbjct 265832 TCTACTGCAGCAAAGGCTACAACACGTTCACCATAGATAGCCTCTTTGTCCCCAATCCAG 265891 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || || ||||| || ||||| || || || ||||| || || || | |||||| ||| Sbjct 265892 CACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGA 265951 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | | || | | |||||| | || | || || | | ||| |||||||| ||| Sbjct 265952 AATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 266011 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || || ||||| || || || || || | || ||||| | |||||||| ||||| ||| Sbjct 266012 TGTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACT 266071 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 | ||||| || |||||||||||||| ||||| |||||||| |||||||| || Sbjct 266072 ATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAA 266131 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAAT 19445 | | | | | ||||||| | | || || | | || | | ||| ||| | | ||| Sbjct 266132 ACCAGAAGACGGGATATAAAATATCTCTCCTC-GGGCTTCAGGGATTCCCAGTGCTGAAT 266190 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 || || || | || || || || ||||| || ||||||||||| ||||||||||| Sbjct 266191 GTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATACAT 266250 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| |||||| | || | || || || | ||||| Sbjct 266251 CTGCCAGATATCATGGTACTCGATGGGGAAGACGACAAA 266289 >seq1399 Length=81552678 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 9735778 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9735719 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 9735718 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 9735659 Query 19103 CAAC 19106 | || Sbjct 9735658 CTAC 9735655 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 9738055 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGACTTGACATCACTCCCATC 9737998 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 9737997 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 9737938 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| |||||||| || | ||| Sbjct 9737937 TCCATAAAGTCAAATGGGTTCTCTAC 9737912 >seq1162 Length=100215132 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || ||||| || ||| Sbjct 56822258 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 56822317 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| | |||||||| || ||||| || Sbjct 56822318 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGCC 56822377 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 56822378 ACCACTCTTTCCCC 56822391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || || |||| Sbjct 56811358 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 56811417 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 56811418 ATAAAATCAAAAGGATTTT 56811436 >seq1115 Length=110690730 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| ||| |||| || | ||| || || | Sbjct 66347487 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 66347428 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| ||||||||||| | || | Sbjct 66347427 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCCTGAGAACAGTTT 66347368 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || |||||||||| ||| || | ||| || || Sbjct 66347367 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 66347319 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| || || Sbjct 66344667 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 66344608 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || |||||||| || ||||||||||| | |||| | ||| || Sbjct 66344607 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATTGGGGCAATAAGTAAACTG 66344548 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 66344547 TTTCTTATACCATA 66344534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561985951121760