Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq893 250 3e-61 seq1 104 3e-17 seq1210 91.5 2e-13 >seq893 Length=109391073 Score = 250 bits (276), Expect = 3e-61 Identities = 249/323 (77%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||| ||| | || |||||||| ||||| Sbjct 41908220 GTTTCACAAAGCAGCTCAACCCCATTGATGGTGAACGGGATTCTGGGGGAGTCAGTAACT 41908279 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| |||| || || |||||| |||| || ||||| |||| | ||| || Sbjct 41908280 CTTCCCCTGGAGCTTCCTGCAGGAGAGAAGGTCAACTCTATCACTTGGCTTTGCAATGGA 41908339 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| || | | || || |||| || || | |||||| |||| ||| Sbjct 41908340 ACATCTCTTGCCTTCATAGTACTCTGTGAAACCAAAAGTCCAGAAATCCACATAACTAAT 41908399 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 ||||||| ||| |||||||| |||||||| |||||||||||||| ||||| |||||||| Sbjct 41908400 CCGAAACAGGGAAAGCGACTGAACTTCACCCAGTCCTACTCCCTGCAACTCAGCAACCTG 41908459 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 |||||||||||||| | || |||||||||| ||| ||| | |||||| | || | Sbjct 41908460 GAGATGGAAGACACATGCTCTTACAGTGCCCAGATATCCACAGAGACCTCTTCAAAGCTG 41908519 Query 2178 TCCAGCTACACGCTGAGGATCTT 2200 ||||| ||||| |||||||| || Sbjct 41908520 TCCAGTTACACTCTGAGGATATT 41908542 Score = 201 bits (222), Expect = 1e-46 Identities = 198/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265 |||||| |||||| || || | || ||||||||| || | ||||||| || ||||||| Sbjct 41913208 AACTGAGGAACATACAAGTTACCAGTCACAGTCAGCTATTTCAGAATAAGACCTGCGAGC 41913267 Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325 |||||||||| || ||||| |||||| | ||||||| ||| || | ||||||||||| Sbjct 41913268 TCCATCTGACTTGCTCTGTGGAGGATGCAGATGACAATGCCTCATTGAGATGGGAGGCCT 41913327 Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 |||| || || ||| | | |||| ||| |||| | ||||||||||||||||| || Sbjct 41913328 TGGGAAACACACTTTCAAGTCAGCCAAACTTCACTATCTCCTGGGACCCCAGGATTTCCA 41913387 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| ||| |||||| ||||| || || || ||||| || ||| | || ||| | |||| Sbjct 41913388 GTGAACAGGACTACAACTGCATAGCAGAGAATGCTGTCAGTAATTTATCCTTCTCTGTCT 41913447 Query 2446 CGGCCCAGAAGCTGTG 2461 | ||||||||||| || Sbjct 41913448 CTGCCCAGAAGCTTTG 41913463 Score = 127 bits (140), Expect = 3e-24 Identities = 218/324 (67%), Gaps = 43/324 (13%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||||||||| || |||||||| ||||| Sbjct 40114149 GTTTCACAAAGCAGCTCAACCCCATTGATGGTGAATGGGGTTCTGGGGGAGTCAGTAACT 40114090 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| || || || | |||| ||| ||||| |||| | ||| || Sbjct 40114089 CTTCCCCTGGAGTTTCCTGCAGGAGAAAGGATCCAGTTCATCATTTGGCTTTGCAATGGA 40114030 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||| | || ||| ||| Sbjct 40114029 ACATCTAC--------TTGACTTCTT------CAA----------------------AAT 40114006 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 ||| ||||||| | |||||| |||||||||||||| || || |||||||| Sbjct 40114005 GGCAAA-------AGCGACTGAGCTTCACCCAGTCCTACTCCCTGCAGCTCAGCAACCTG 40113953 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 |||||||||||||| || | |||||||||| ||| || | |||||| | | || | Sbjct 40113952 GAGATGGAAGACACAGGCTTTTACAGTGCCCAGATAGCCACAGAGACCTCTGCAAAGCTG 40113893 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 ||||| ||||| |||||||| ||| Sbjct 40113892 TCCAGTTACACTCTGAGGATATTC 40113869 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 2661 CACCTCAGACCAAAACATGCTAAACATAACACACCAGCA----GACTGACTCTTTGATAA 2716 ||| |||| ||||||||||||||| |||||||||||||| |||| ||||||||||| Sbjct 41918116 CACTTCAGGCCAAAACATGCTAAAGATAACACACCAGCACATTGACTCTCTCTTTGATAA 41918175 Query 2717 ATAAGCTAATGGAATTATGGTTGAC 2741 ||||| |||||||||||||||||| Sbjct 41918176 CTAAGCAAATGGAATTATGGTTGAC 41918200 >seq1 Length=122973662 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || || || || || | ||||||||||| ||||||||||||||| || || | |||| Sbjct 76140290 CCCTCGTGCTGCACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCT 76140349 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||||||| ||||| | || || | |||| || || ||| Sbjct 76140350 GCCCACTTCTGGAAGGTTCCATCTCCTGCTGGCCTGGTCTCCACAAGCTCGGTGTCCTGA 76140409 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || || || || || | ||| || | | | || || || || || || |||| Sbjct 76140410 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 76140469 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 76140470 GCCCAGCACC 76140479 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || || || || || | ||||||||||| ||||||||||||||| || || | |||| Sbjct 76175433 CCCTCGTGCTGCACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCT 76175492 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||||||| ||||| | || || | |||| || || ||| Sbjct 76175493 GCCCACTTCTGGAAGGTTCCATCTCCTGCTGGCCTGGTCTCCACAAGCTCGGTGTCCTGA 76175552 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || || || || || | ||| || | | | || || || || || || |||| Sbjct 76175553 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 76175612 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 76175613 GCCCAGCACC 76175622 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || || || || || | ||||||||||| || ||||||||||| || || | ||| Sbjct 74690057 CCCTCGTGCTGCACATGGCATGTGTATCTCTGTTCCTCTCCAGAAGGCACCACCACAGCG 74689998 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || ||||| ||||| || || || | || || | ||||||| || || Sbjct 74689997 GCCCACTTCTGGAACGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCTGTGTCCTGG 74689938 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || || | ||| || | | | || || || || || || |||| Sbjct 74689937 GTCTGTTCCTCCCCATCCCGCTGCCAGGTCAATGTGATCTCCGCAGGGTAGAAGCCCAGG 74689878 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 74689877 GCCCAGCACC 74689868 >seq1210 Length=99891981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 177663 AATCTAACCTACTCTACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAA 177722 || || |||| ||| ||||||||||| |||||| |||| |||||||| ||||| || Sbjct 88994408 AACCTGACCTGCTCCACAAATGACACTGGAATCTCCATCAGTTGGTTCTTCAATAACCAG 88994349 Query 177723 AATATATCATCATCACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGAC 177782 | | | | || ||| ||| || |||||| || || | | | |||||||| ||| || Sbjct 88994348 AGTCTCCCGTCCTCAGAGAGGATGAAGCTGTCCCAGGGCAACACCACCCTCAGCATAAAC 88994289 Query 177783 CCGGTC--GAGAGAGGAT-TTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATGT 177839 || ||| ||| |||||| ||||| | || |||||||||| ||||| ||| | Sbjct 88994288 CCTGTCAAGAGGGAGGATGCTGGGAAG-TATTGGTGTGAGGTCTTCAACCCAATCAGTAA 88994230 Query 177840 AAACCAAA 177847 ||||||| Sbjct 88994229 GAACCAAA 88994222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629145670156640