Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1685 241 2e-58 seq1724 226 3e-54 seq1399 111 2e-19 seq1162 107 2e-18 >seq1685 Length=141252148 Score = 241 bits (266), Expect = 2e-58 Identities = 339/470 (72%), Gaps = 6/470 (1%) Strand=Plus/Minus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| || || ||||||||| |||||||| |||||||| || || |||||||| Sbjct 47456960 TTTGAACATCAAGCAAGCAAAATCAG--TGTAAACCCTCATCTCTGCTAATAAATTCATT 47456903 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| Sbjct 47456902 GGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGA 47456843 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 | |||||||| || ||||| ||||| || || ||||||| |||| ||| | || || Sbjct 47456842 ACTGGAAAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACC-ATAGGTGG 47456784 Query 37343 ACTATAA-TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTG 37401 || | || |||||| | |||||||||||| || ||||| || | Sbjct 47456783 CCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG 47456724 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 ||||||| || || |||||||| | |||||| |||| | || ||||| ||||| | Sbjct 47456723 TTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAA 47456664 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 | | ||||||||||||||| || || ||||| || || || || || ||||| ||||| | Sbjct 47456663 GGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGC 47456604 Query 37522 TAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 ||||| | |||| ||||| | ||| | || | || |||||||| ||||| Sbjct 47456603 GGGCTTCTG-TAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATG 47456545 Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 ||||| || |||||||||||| | ||||||| |||||||| ||| || Sbjct 47456544 CCATCGCTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTC 47456495 Score = 152 bits (168), Expect = 6e-32 Identities = 313/457 (68%), Gaps = 9/457 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || | | |||| | ||||| || | Sbjct 130531236 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGG 130531177 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||| ||| || | ||| ||||| ||||||||| ||||||||||| Sbjct 130531176 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 130531117 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--CTATAATCAG 37353 | | ||| ||| ||||| ||| ||| |||| || | | | | || | || Sbjct 130531116 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCC-ATGGGTAACGTCTTTGTTCCC 130531058 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 || |||| |||| ||||||| || ||||| || | ||||||| || | Sbjct 130531057 AA-TCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGCA-TCGTTTCAACGGCAT 130531000 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | |||| ||| | |||||| ||||| | |||| || |||| || | ||||| | Sbjct 130530999 TGAAGATAAATTCCCTTTCTTTGTTATCTTTAATATGCGT--CAATAAGGAGACTATTTA 130530942 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | ||||| || || ||||| ||||| || || || ||||| || || | ||| | || Sbjct 130530941 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG-TA 130530883 Query 37534 AT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 || ||||| || | || ||| | | |||||||||| | ||||||||||| ||| Sbjct 130530882 ATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCT 130530823 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTT 37629 ||||||||||| |||| || |||||||| ||||| Sbjct 130530822 GCAAAGAAAGCCAGAATATGGGATATAAAATATCTTT 130530786 >seq1724 Length=455154 Score = 226 bits (250), Expect = 3e-54 Identities = 339/475 (71%), Gaps = 5/475 (1%) Strand=Plus/Plus Query 37161 TATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||||| |||| || || ||||||||||| |||||||| |||||||| || || | |||| Sbjct 265692 TATTTGAACATCAAGCA-GCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 265750 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 || ||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||| Sbjct 265751 TTCGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAA 265810 Query 37281 GATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT 37340 || || |||||||| || ||||| ||||| ||||| ||||||| |||| ||| | || | Sbjct 265811 GAACCGGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACGTTCACC-ATAGAT 265869 Query 37341 GAACT-ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT 37399 || | || |||||| | |||||||| || || || || || Sbjct 265870 AGCCTCTTTGTCCCCAATCCAGCACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCAT 265929 Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459 ||||| || || || |||||||| | |||||| |||| | || ||||| ||||| Sbjct 265930 CGTTTCGATGGCATTAAAGAGAAATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAAT 265989 Query 37460 TAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA 37519 || | ||||||||||||||| || || ||||| || || || || || |||| ||||| Sbjct 265990 AAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGACATAGAAACA 266049 Query 37520 CCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTA 37578 | ||||| | |||| ||||| | ||| | || | || |||||||| |||| Sbjct 266050 GCAGGCTTCTG-TAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTA 266108 Query 37579 TCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 | |||||||| |||||||||||| | |||| | |||||||| ||| || || Sbjct 266109 TGCCATCACTTGCTGCAAAGAAAACCAGAAGACGGGATATAAAATATCTCTCCTC 266163 >seq1399 Length=81552678 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 9735776 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 9735717 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 9735716 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 9735657 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 9735656 ACAACACGT 9735648 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 9738010 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 9737952 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 9737951 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 9737918 >seq1162 Length=100215132 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 56822256 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 56822315 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || ||||| | Sbjct 56822316 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 56822375 Query 37318 CTAC 37321 | || Sbjct 56822376 CCAC 56822379 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCC 36880 |||||||||||||| |||| || || || |||| | || || || ||||||| | Sbjct 56811293 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTG-TTGTTTCTGC-CATAACTGC 56811350 Query 36881 CATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATAT 36940 | ||||| || ||||||| | || || |||||||| |||||||||| || || Sbjct 56811351 AAAACGCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAAT 56811410 Query 36941 ATTTTCCATAAAATCAAATGGATT 36964 ||||||||||||||||| ||||| Sbjct 56811411 GTTTTCCATAAAATCAAAAGGATT 56811434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592187349163360