Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq254 129 5e-25 seq1503 127 2e-24 >seq254 Length=152096393 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 60593021 AGGCCCGTGATGTGTGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 60592962 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 60592961 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 60592902 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 60592901 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 60592858 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 60588881 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 60588822 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 60588821 CCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 60588762 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 |||||| || || ||||| || |||||||| | |||||||| || Sbjct 60588761 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 60588714 >seq1503 Length=86207423 Score = 127 bits (140), Expect = 2e-24 Identities = 187/260 (72%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || || Sbjct 27530777 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATC-CT 27530719 Query 112140 C-AGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 112198 | | ||||| |||||| || |||||||||||||| ||||| |||||||| ||||||| | Sbjct 27530718 CTAAAGGTCGATTCTTCTCAGGGATGGAGAACCAGGTCTTCCTACCCATAATCACCAGAT 27530659 Query 112199 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 112257 |||| || ||| |||||||| || | |||| | ||| | || | | || || || Sbjct 27530658 TCTGTTTACCTTCTACTGAAGAAGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 27530600 Query 112258 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACAC 112317 | || || |||| ||||| || ||||| || ||||||||||||| | | || Sbjct 27530599 CGGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTTTGGGAC 27530546 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 27530545 ACAGCGACGATGCAGTTTAG 27530526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408530529207932