Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq683 196 9e-45 seq1685 109 1e-18 seq1724 102 2e-16 seq1115 95.1 2e-14 seq334 93.3 8e-14 >seq683 Length=106955855 Score = 196 bits (216), Expect = 9e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 61599606 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 61599665 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 61599666 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 61599725 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 61599726 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 61599785 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 61599786 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 61599845 Query 241625 GAC 241627 ||| Sbjct 61599846 GAC 61599848 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 56338031 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 56337972 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||||||||| ||||| |||| |||||| ||||| Sbjct 56337971 TCCGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCTTCCAGGCGCGAGATGCGCTCCAGC 56337912 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 56337911 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 56337852 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 56337851 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 56337819 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | |||||| | ||||| ||||||| Sbjct 61599643 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGT 61599702 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 61599703 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 61599757 >seq1685 Length=141252148 Score = 109 bits (120), Expect = 1e-18 Identities = 269/404 (67%), Gaps = 7/404 (2%) Strand=Plus/Minus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 |||| ||||||| ||| || ||| ||||| || ||||| ||| ||||| |||| Sbjct 47457102 ACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCT 47457043 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092 ||||| || |||| |||||||| || || | | || | | || | || Sbjct 47457042 CGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTCTCTCCT 47456983 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | || |||||| |||||| ||| | | || ||| ||||| || ||| || | Sbjct 47456982 CCGATAGTTTGTGTACCAGGTGTTTGA---ACATCAAGCAAGCAAAATCAGTGT--AAAC 47456928 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 | || || | ||| || | | ||||| || ||| |||||||| | || | | | Sbjct 47456927 CCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 47456868 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 ||||||| || || | || ||||| | || ||||||||||| || ||||| ||||| | Sbjct 47456867 TGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCCTTCTACTGCAGCGAAGG 47456808 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGTCT 48331 | | | || || | | || | ||||| |||||| | ||| ||||| ||| Sbjct 47456807 CTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCCAATCCAGCGCAAG-GCCCAATCT 47456749 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||||||||||||| || |||||||| || ||||| |||||| Sbjct 47456748 GCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG 47456705 >seq1724 Length=455154 Score = 102 bits (112), Expect = 2e-16 Identities = 454/710 (64%), Gaps = 18/710 (3%) Strand=Plus/Plus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 |||| ||| ||| ||| || ||| ||||| || ||||| || ||||| |||| Sbjct 265552 ACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCATAGGCAAGGCCT 265611 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC--TGCT-TAACGCGGG 48089 ||||| || |||| |||||||| || || | | ||| | || | || | Sbjct 265612 CAGTGAGGAATTCCTGTTCTATCTGAACAGCATTG---ATAATTGTTTCTCTCACTCTCT 265668 Query 48090 ACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCA 48149 ||| || ||||||| ||||| ||| | | || |||| |||| || | ||| | Sbjct 265669 CCTCCGATGGTTTGTGCACCAGGTATTTGA---ACATCAAGCAG-CAAAATCACAGTGTA 265724 Query 48150 AGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCT 48209 | || || || | ||| || || | || || || ||| |||||||| | || | | Sbjct 265725 AACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCATCAGTCCTCGTT 265784 Query 48210 GTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGA 48269 |||||||| || || | || ||||| || || ||||||||||| || ||||| || | Sbjct 265785 TCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCTACTGCAGCAA 265844 Query 48270 ACGCGGTGAGCCTCTCTCCGAAAGA-AGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAG 48328 | || | | || || | ||| ||| | ||||| |||||| | | || || Sbjct 265845 AGGCTACAACACGTTCACC-ATAGATAGCCTCTTTGTCCCCAATCCAGCACAAGGCTCAA 265903 Query 48329 TCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCA 48388 ||||| |||||||||| ||| |||||||| || ||||| ||||| | | || Sbjct 265904 TCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAAATTCCCTTTCT 265963 Query 48389 CCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTC 48445 || || | || || | | || || | ||||| ||||| || | || Sbjct 265964 TTGGCATCTTTGATGTAAGTGTCAATAAGGAGACT---ATACATTTCAGAATGTATGTTT 266020 Query 48446 TCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAG 48505 || || || || ||||| | ||||| | ||| || | ||| ||| | | Sbjct 266021 TCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTATTTGGCTA 266080 Query 48506 AATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACA 48565 |||| ||||| || ||| ||||| ||||| ||||| || |||||||| | || | | Sbjct 266081 AATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAAGA 266140 Query 48566 TGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCC 48625 | | |||| | ||| | | | | || | | |||| ||| | ||| ||| | Sbjct 266141 CGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAC 266200 Query 48626 AGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 |||||||| || || ||||||||||| || ||| ||||| ||||| Sbjct 266201 AGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATACAT 266250 >seq1115 Length=110690730 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 66335616 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 66335557 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| ||||||||||| || |||| || || ||| ||| Sbjct 66335556 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTCTG 66335498 Query 213647 GGAC 213650 ||| Sbjct 66335497 AGAC 66335494 >seq334 Length=143122389 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 39188688 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 39188747 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 39188748 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 39188807 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 39188808 ATGGGGGAC 39188816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931329213506560