Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1724 127 4e-24 seq1399 84.2 4e-11 >seq1724 Length=455154 Score = 127 bits (140), Expect = 4e-24 Identities = 375/566 (66%), Gaps = 24/566 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| || ||||| | || ||||||| |||| ||| | || Sbjct 266262 GATATCTGGCAGATGTATAAAAAGGCAGAGGCTTCCTTCTGGACCACCGAGGAGGTGGAC 266203 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGC-ATTTTCTCAA 25592 ||| |||||||||| | |||| | | || || |||| || || || | | Sbjct 266202 CTGTCCAAGGACATTCAGCACTGGGAATCCCTG---AAGCCCGAGGAGAGATATTTTATA 266146 Query 25593 GTACGTGTT--GGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 ||| || || ||||||||||| |||||| ||||| || || ||| || ||| Sbjct 266145 TCCCGTCTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAG 266086 Query 25651 AGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 |||| | | ||| ||| ||| || ||| |||||||| | ||||| || | Sbjct 266085 CGATTTAGCCAAATAGTTCAGATTACA--GAAGCCTGCTGTTTCTATGTCTTCCAAATTG 266028 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAG 25765 |||| ||||| | || ||||| ||||| | || || || || ||||| | || Sbjct 266027 CCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATCAAAG 265971 Query 25766 ACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | | | || || || || ||| ||||||||| || || || |||||| || Sbjct 265970 ATGCCAAAGAAAGGGAATTTCTCTTTAATGCCATCGAAACGATGCCTTGCGTCAAGAAGA 265911 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGC 25882 | || || ||| || ||||| ||| |||| |||| | ||| || || Sbjct 265910 ACGCAGATTGAGCCTTGTGCTGGATTGGGGACAA--AGAG-GCTATCTATGGTGAACGTG 265854 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 | |||||||||||||| || || |||||||| || |||||| ||||| | || || | Sbjct 265853 TTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTGT 265794 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| || || ||||| || || || || ||||| Sbjct 265793 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCGAATGAACTTATTAGCAGA 265735 Query 26002 GACGAGGGTCTCCACAGAGATTTTGC 26027 || |||||| | ||| | |||||||| Sbjct 265734 GATGAGGGTTTACACTGTGATTTTGC 265709 >seq1399 Length=81552678 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| |||||||| || ||||| ||||| | || |||||| Sbjct 9735655 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 9735714 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || |||||||| || || || ||||| || Sbjct 9735715 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 9735773 Query 26004 CGAGG 26008 |||| Sbjct 9735774 TGAGG 9735778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928641800968960