Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 298 6e-76 seq1503 167 3e-36 seq406 136 5e-27 seq944 100 3e-16 >seq1 Length=122973662 Score = 298 bits (330), Expect = 6e-76 Identities = 666/992 (67%), Gaps = 11/992 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||| || ||| || |||| ||| |||| ||| || | |||||| || |||| || | Sbjct 58505577 TGTGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACT 58505636 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || |||| ||||| | | || ||||||| || ||| || | ||||| | Sbjct 58505637 TATTGGCAAACAAGTGGTGTTGGCGC---AGCATCCAGTTCAAGTCACCAGCTCCGAAAA 58505693 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||| || || || | || || || | ||| || ||||| |||| || || | || | Sbjct 58505694 TGCACACTGAGCGCACATGGACTCCATCGCAGGGTGGGTAGGGAGCACCCTTGGAAACAT 58505753 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||| || ||||||||||||| ||||||||||| | || |||||||| || || | Sbjct 58505754 CACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCAT 58505813 Query 160285 ATTTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCA 160342 | || | | ||| | || |||||| | | || || | || | ||||||||| Sbjct 58505814 ACTTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTTTGGATGGTGGCCCA 58505871 Query 160343 CAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT 160402 || | || || |||||||| ||||| | | ||| |||| |||| | |||| Sbjct 58505872 GAGATACTCATCAGGGCTGTATGTGTCTTGCGCCCACTCCACAAACTTTTGGATTTTTTC 58505931 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 | | | || |||| || || || | || || ||||| || ||||| || || Sbjct 58505932 ATTCTGTAGTACGTACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAA 58505991 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 | ||| | | || || |||| | || ||||| | || | ||| || Sbjct 58505992 AAGAGGTGTTTCAAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCATT 58506051 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 || | | | | ||||| |||||||| | || || | |||||| | ||||| || Sbjct 58506052 AACGACCTCATACCGCTTTTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTTC 58506111 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 || |||| | || | | | || |||| | |||| || |||||||| || || | Sbjct 58506112 CAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAAT 58506171 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 ||||| || |||| || | ||||||| ||||||||| || || ||| | | || Sbjct 58506172 AGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCATTCATTGCATAGAG 58506231 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 |||| ||||||| || | || ||||| ||||||||||| || || || || || |||| Sbjct 58506232 GTCCTTCATGCAGTTGAGGTCAGCCTGAACGCGGCTCCACGATGCATAAACCACACTCTC 58506291 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--A 160820 | | |||||||||||||| ||| ||||| || |||| |||| ||| | ||| | Sbjct 58506292 CAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTG-CAGCTA 58506350 Query 160821 AAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 || | | | || | ||| ||||||||| | |||||| | ||||||||| ||| Sbjct 58506351 AATAGGA-ATCCTCGGATTTTGTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAG 58506409 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 |||||||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||| Sbjct 58506410 ATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCT 58506469 Query 160941 ATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATA 161000 || |||||||| | ||| || ||| |||| | | || || || ||||||| Sbjct 58506470 ATTGGAAACTCCGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGATG 58506529 Query 161001 AAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| || ||| || | |||||||| ||||| Sbjct 58506530 AAAGAAGTACAGTCACTGGTCATGTTTATATA 58506561 >seq1503 Length=86207423 Score = 167 bits (184), Expect = 3e-36 Identities = 232/324 (72%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 168151 ATAGA--GTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCA 168208 ||||| || | ||| | | |||| || ||||| || | || || || |||||||| || Sbjct 9281797 ATAGACGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGACA 9281856 Query 168209 CATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAG 168268 |||| | || ||||| ||||||| |||| ||||||| || || | ||||||||| |||| Sbjct 9281857 CATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAG 9281916 Query 168269 GCCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTT 168328 |||| ||| || ||||| | || ||||| | ||| || | || || || ||||| Sbjct 9281917 TCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTT 9281976 Query 168329 CTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTAT 168388 ||||||||||||| ||||||| || ||||| || || | |||||||| || || || Sbjct 9281977 CTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAAT 9282036 Query 168389 CAGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTC 168448 || | || | | | ||||| || ||| | | ||||| || |||| |||| | || Sbjct 9282037 GAGGGCTTCCTGGGCATTTTGCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCTC 9282096 Query 168449 TCGCTCATCTTGAGTTACGACCTG 168472 || ||||| || || || || || Sbjct 9282097 TCTTTCATCCTGGGTCACCACTTG 9282120 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 9278956 GTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 9279012 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| | || | ||||| || ||| || || ||||| Sbjct 9279013 CCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCATTT 9279072 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || ||||||||||| | | ||||||||||| | Sbjct 9279073 GGGTGAGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGACC 9279132 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || ||||||| Sbjct 9279133 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 9279172 >seq406 Length=121039945 Score = 136 bits (150), Expect = 5e-27 Identities = 585/917 (64%), Gaps = 26/917 (3%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || | || |||||||| ||| || | ||||| ||| ||| | ||| Sbjct 21318238 TGTCTCAGATGATCATTCAAACATTGGATGGCAAAGAGGTCAATGTCGATGTCAAGCTTA 21318297 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 | || |||| || || || || || ||||| | || ||| || | | ||| | | Sbjct 21318298 CTGGCAAACAAGTGATGC---TTGTGCAGCATCCATTTCAAGTCACCAGCTCTGAAAATG 21318354 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || | | | | ||| | | || ||| || ||||| |||| || || | || ||| Sbjct 21318355 CACAAGT---GCACGTGGTCCCTGTCGCAGGGTGGGTAGGGAGCACCCTTGGAAACATCA 21318411 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||| ||| | || |||||||| || || ||| Sbjct 21318412 CCCTCCAAGTACTGCCACTTGACAAACCAGGCAACTGCATGCATGTCAGACAAGTTGTAC 21318471 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | || | | || || || | || |||| ||| | |||||| || || Sbjct 21318472 TTATGGCTTGTGGAGAGTGAGCCAGGGACTTCAGGAATACTCTGGATGGTGGCTCAGAGA 21318531 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 || || ||||||||||| ||||| | | ||| ||||| |||| | ||| | || Sbjct 21318532 TGCTCATCGGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGAATT--TTTTTC- 21318588 Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466 | | ||| || || || | || ||||| || || | ||| || | | Sbjct 21318589 -----ATCCTGAAGTACATACTCCCTACTGACCACAAAATAGGCACAGCCTGAACAAAGA 21318643 Query 160467 GGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || | || || ||| | ||| | | || ||||| | || | ||| Sbjct 21318644 AGTGTTTCAAGTGGAGAAGGCAT---TTTAACATTCCCTGTGTTTGTCAGCTTTCC---A 21318697 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | | |||| |||||||| | || | | |||||| | ||| | || Sbjct 21318698 AAAACCTCATACTGCTTTTTCCACCTTTCTCCTTTATTGGATGGCATCCTCTCCATTTCG 21318757 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 || |||| | || | | | || | || | |||| || ||| | || | || | Sbjct 21318758 AGGTTGTTTTCTCCCATTAACAACTTGATCTTCCTGACAATTTCT-GATTGGCTTTAATA 21318816 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 ||||| || |||| || | ||||||| ||| ||||| || |||| | | | | Sbjct 21318817 GGAAAATCCATACCACAAAGTTTTATCAAGTATTTCCAGCCTGCACTCATTGCTTAGA-G 21318875 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 ||| |||| ||||| | || ||||| || ||||||| || || || || || |||| Sbjct 21318876 TCCTTCATACAATTGAGGTCAGCCTGAACCTGGCTCCATGATGCATAAACCACACTCTCC 21318935 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||||||||||||| ||| ||||| | | || ||| ||| || || Sbjct 21318936 AATCAGCTGGCCACAAAGACTTTACTAAAACAGAATGCAATGTCCATCACTGCAGCTAAA 21318995 Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 || || || | ||| ||||| ||| | | ||| | ||||||||| | ||||| Sbjct 21318996 AAGGAATTCTCTGATTTTTTGTCCATGTGAATGTGATAGAAATTCTGAGGCACATAGAT- 21319054 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 ||||| || | ||| || | ||| || ||||| ||||| | ||| ||||| || ||| | Sbjct 21319055 GCCCTCAGTAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCTTTT 21319114 Query 160944 GGAAACTCGGTCTCCTC 160960 ||||||| | ||| || Sbjct 21319115 TGAAACTCCGCCTCTTC 21319131 >seq944 Length=110113093 Score = 100 bits (110), Expect = 3e-16 Identities = 236/348 (68%), Gaps = 14/348 (4%) Strand=Plus/Minus Query 160608 TTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTT 160667 || |||| ||||||||| | |||||| || || | ||||| || ||| || | | | Sbjct 48455526 TTGAGCTTCTTGACGATTT-TAGGTTGGTTTTAATAGGAAAATCCATACTACAAACATGT 48455468 Query 160668 ATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCTCATGCAATTAATATCTG 160725 || | ||||||| | || || | |||||| |||||||||||| || | || | Sbjct 48455467 ATTAAGTACTTCTCGTCTGCACTTACT--GTGCAGAGGTCCCTCATGCAGTTGAGGTCAG 48455410 Query 160726 CCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGT 160785 || | || || ||||| | || | || | |||| | | || ||||||||||| || Sbjct 48455409 CCAGAACCCGACTCCACAAGGCACAAACCAGACTCTCCAACTGACAGGCCACAAAGATGT 48455350 Query 160786 TATCGAAACACGACACGATTCCCACCA---CCGCCAGAAAGAACATCTTATCCGCCT-TT 160841 || ||| | ||||| || |||| || | || | |||| | |||| | | || || Sbjct 48455349 TACTGAA--ATGACACAATGCCCATCACTGCAGCTAAAAAGGA-ATCT--GCTGACTGTT 48455295 Query 160842 CGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCG 160901 |||||| || | |||||| | ||||||||| |||||||| || | | ||| || Sbjct 48455294 TTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCTCTCCGGAGCCTGTCA 48455235 Query 160902 AACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949 | ||| || || || | ||| | || | ||| || ||||| |||||| Sbjct 48455234 AGCATTTCAATTTTGTAATGAACCAGTACAGAATATGCTATTGGAAAC 48455187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577093048743840