Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq944 114 2e-20 seq1399 105 1e-17 seq565 98.7 2e-15 seq254 96.9 6e-15 seq683 89.7 9e-13 seq1044 87.8 3e-12 seq1685 86.0 1e-11 seq1115 86.0 1e-11 >seq944 Length=110113093 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| ||| ||| || ||||||||||| |||||||| || Sbjct 27807612 ATCTTCCAGTTGCTTGCCAGCAAAGATTGGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 27807671 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || ||||| |||| |||| | ||||| || | ||||| || || || || Sbjct 27807672 ATCCTGGATCTTGGTCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGAT 27807731 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 ||||| ||||| || ||||| ||||| || ||||||| Sbjct 27807732 GGTTTTCCCTGTAAGAGTTTTCACAAAAATCTGCATTT 27807769 >seq1399 Length=81552678 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | || || | || | ||| | |||| |||||| |||||| ||| | || Sbjct 71370968 ACCACCACACAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGA 71371027 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| || | ||| || || ||||| || ||| || ||||||||||| Sbjct 71371028 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 71371087 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| ||||| || || |||| |||| |||| || ||||| || || ||| | Sbjct 71371088 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGATTCAGC 71371147 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || | || ||||| || || || |||||||| Sbjct 71371148 CTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 71371198 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||||||||| || | |||||| || || ||||| Sbjct 65744053 ATACCACCTCTCAGACGCAGGACCAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCA 65743994 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || || || Sbjct 65743993 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGG 65743934 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || || | || | |||| || || || | ||| Sbjct 65743933 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 65743874 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || ||||| || || || |||||||| Sbjct 65743873 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATCTGCATTTT 65743821 >seq565 Length=117381234 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | ||| ||| || |||||| | ||| || || || | ||| || Sbjct 50944580 ACAAGATGAAGAATAGACTCCTTTTGAATATTGTGGTCAGACAAAGTACGTCCATCTTCC 50944521 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || |||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 50944520 AGCTGCTTGCCAGCAAGGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 50944461 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| || | |||| | ||||| || | ||||| || || || ||||| || Sbjct 50944460 ATCTTGGCCTTCACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATAGTCTTC 50944401 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| || || || |||||||| Sbjct 50944400 CCTGTAAGGGTTTTCACGAAAATCTGCATTTT 50944369 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | ||| ||| || |||||| |||| || || || | ||| || Sbjct 72458831 ACAAGATGAAGAATAGACTCCTTTTGAATATTGTAGTTAGACAAAGTACGTCCATCTTCC 72458772 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | ||| || ||||||||||| |||||||| ||||| | Sbjct 72458771 AGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCCGG 72458712 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || |||| || | ||| | || || || || || || Sbjct 72458711 ATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCATCCTCGAGGGTGATGGTCTTC 72458652 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| || || || |||||||| Sbjct 72458651 CCTGTAAGGGTTTTCACGAAAATCTGCATTTT 72458620 >seq254 Length=152096393 Score = 96.9 bits (106), Expect = 6e-15 Identities = 311/451 (69%), Gaps = 54/451 (12%) Strand=Plus/Minus Query 46777 atatattataataaactgtattat-ttgactatttt--ta-ataatatatgttatggtat 46832 |||||||| ||| | | ||| || || | ||| || || ||| |||||| ||| || Sbjct 61681564 ATATATTAGTATATATTATATGATATTTAATATATTAGTATATATTATATGATATTTAAT 61681505 Query 46833 atat--gta---att-tACGATATTTGGAAATTTTAATATGTTTACTGATATGATATTTA 46886 |||| ||| ||| || ||||||| | || ||| ||| | | |||||||||||| Sbjct 61681504 ATATTAGTATATATTATATGATATTTA-ATATATTAGTATATATT---ATATGATATTTA 61681449 Query 46887 ATA-ATT-GGATAAACTGTATAAAATTAAGAGACATATGTATTATTTTATCTATAATAAC 46944 ||| ||| | ||| | | ||| | ||| | | |||| || || ||| ||||||| Sbjct 61681448 ATATATTAGTATATATTATATGATATTTA---ATATATTTAATAAATTA--TATAATA-- 61681396 Query 46945 TATTATATTTAATTGTGCATTA-ACAGTATTAGAAT---tatactcattcatatatt-ta 46999 |||||||| || | | || | | | ||||| | | |||||| || |||| || || Sbjct 61681395 TATTATATATACTAATATATAATATACTATTACATTATATATACTTAT--ATATGTTATA 61681338 Query 47000 aaacatatacatatatcaaatatagcactatgtataataaataCTTCGttacttttaatt 47059 || |||||||||||| | |||| | | || ||| ||| ||| || | ||| | Sbjct 61681337 CAATATATACATATATAATATATTGTATAATATATTATATATA----TGTATATATAA-T 61681283 Query 47060 aatatatttataaatttattat-taatgtatgcta-tatacttaaatattagaattatag 47117 | ||||||| || || ||| |||| ||| || |||| ||| ||||| | |||||| Sbjct 61681282 AGTATATTT---TATATACTATATAATATATAATAGTATATTTATATATT-GTATTATAT 61681227 Query 47118 taaaaat--atttataatactatatattattagcatcgcgttgta-tatattattaacta 47174 || | || || ||||||| ||||| |||| || ||||| |||||||| | || Sbjct 61681226 TATATATTAATATATAATAGTATAT-TTAT----AT---ATTGTATTATATTATATATTA 61681175 Query 47175 atat-taaaatatattcgtatGGTTTTATAT 47204 |||| ||| ||||||| |||| | |||||| Sbjct 61681174 ATATATAATATATATT-GTATTATATTATAT 61681145 >seq683 Length=106955855 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | ||| || ||||||||||| |||| ||||||| | || || Sbjct 66541083 TGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCTTTCTTTACCCTGGATC 66541142 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| |||| || |||||||| | || | || || ||||| ||||| ||| Sbjct 66541143 TTGGCCTTTACATTTTCTATGGTATCGGAGGGTTCCCCCTCGAGGGTTATGGTTTTCCCT 66541202 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||| |||| | || || |||||| Sbjct 66541203 GTAAGCATTTTCAGGAAAATCGACATTTT 66541231 >seq1044 Length=11392 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||||||||| || | |||||| || || ||||| Sbjct 9416 ATACCACCTCTCAGACGCAGGACCAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCA 9475 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || || || Sbjct 9476 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGG 9535 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || || | || | |||| || || || | ||| Sbjct 9536 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 9595 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || ||||| || || || |||||||| Sbjct 9596 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATCTGCATTTT 9648 >seq1685 Length=141252148 Score = 86.0 bits (94), Expect = 1e-11 Identities = 264/386 (68%), Gaps = 33/386 (9%) Strand=Plus/Plus Query 46772 ataatatatattata-ataaactgtat-tatttgac---tatttttaataatatatgt-- 46824 ||||||||||||||| ||| | | ||| ||||| | |||| | ||||||||| | Sbjct 121759466 ATAATATATATTATATATATAATATATATATTTTATATATATTATATATAATATATATAA 121759525 Query 46825 --tatggtatatatgtaatttACGATAT-TTGGAAATTTTAATATGTTTACTGATATGAT 46881 ||| |||||| || |||| |||| || | || || ||| | | | |||| || Sbjct 121759526 AATATATAATATATATATTTTAT-ATATATTATACATAATA-TATATAAAAT-ATATAAT 121759582 Query 46882 ATTTAATA-ATTGGATAAACTGTATAAAATTAAGAGACATATGTATTATTTTATCTATAA 46940 || ||||| ||| ||| | | |||| ||| | |||| | ||| | || ||||| Sbjct 121759583 ATATAATATATTATATATATTATATATAAT------ATATATAAAATATATAATATATAA 121759636 Query 46941 TAACTATTATATTTAATTGTGCATTAACAGTAT-TAGAATtatactcattcatatattta 46999 || ||||||||||| || || | | ||| || || |||| | |||||| || Sbjct 121759637 TATATATTATATTTATTT----ATATATATTATATATAAATATATATAAATATATATATA 121759692 Query 47000 aaacatatacatatatcaaatatagcactatgtataataaataCTTCGttactttta-at 47058 || ||||| ||||| | ||||| | ||| ||| ||||||| | || | || || Sbjct 121759693 TAA-ATATATATATA-AATATATATAAATATATAT-ATAAATATATATATAAATATATAT 121759749 Query 47059 taatatatttataaatttat-tattaatgtatgctatatacttaaatattagaat-tata 47116 ||||||| ||||||| ||| ||| ||| ||| || ||| || |||| | || |||| Sbjct 121759750 AAATATATATATAAATATATATATAAATATAT-ATAAATATATATATATAAATATATATA 121759808 Query 47117 gtaaaaatatttataatactatatat 47142 || |||||| ||||| ||||||| Sbjct 121759809 -TATAAATATATATAAATATATATAT 121759833 >seq1115 Length=110690730 Score = 86.0 bits (94), Expect = 1e-11 Identities = 292/430 (68%), Gaps = 49/430 (11%) Strand=Plus/Minus Query 46772 ataatatatatt-ataataaactgtattatttgactatttttaataatatatgt-tatgg 46829 |||||||||||| |||||||| || ||| | |||| | ||||||||| | ||| Sbjct 51815066 ATAATATATATTTATAATAAA---TAATATATATATATTATATATAATATATATATATTA 51815010 Query 46830 tatatatgtaatttACGATATTTGGAAATTTTAATATGTTTACTGATATGATATTTAATA 46889 ||||||| | || || |||| | | ||| || ||| | || |||| |||| ||||| Sbjct 51815009 TATATATATTATATATAATATATATATATTATA-TATATATA---ATATAATATATAATA 51814954 Query 46890 -ATTGGATAAACTGTATAAAAT---TAAGAGACA-TATGTATT---ATTTTATCTATAAT 46941 || ||| | | ||||| || | | | | | ||| |||| ||| |||||||||| Sbjct 51814953 TATATAATATAATCTATAATATATATTATATATAATATATATTTATATTATATCTATAAT 51814894 Query 46942 AACTATTATATTTAATTGTGCATTAACAGTATTAGAATtatactcattcatatatttaaa 47001 | |||||||| ||| | | ||| | ||||| | |||| | || || ||| || | Sbjct 51814893 ATATATTATATATAA-TATATATTTA---TATTATATCTATAAT-ATATAT-TATATATA 51814840 Query 47002 acatatacatatatcaaatatagcactatgtataataaataCTTCGttacttttaattaa 47061 | ||||| ||||| |||| || ||||||||||| | || || ||| | | Sbjct 51814839 ATATATATTTATAT----TATA----TAAATATAATAAATA--TATATAATTATAAATTA 51814790 Query 47062 tatatttataaatttattattaatgtatgctatatacttaaatattagaattatagtaaa 47121 || || ||||||| || || |||| ||| ||||| |||||| |||| |||| Sbjct 51814789 TA-ATATATAAATATAATA-TAATTTATATTATAT-----TATATTA----TATA-TAAA 51814742 Query 47122 aatat-ttata-atactat-atattattagcatcgcgttgtatatattattaactaatat 47178 |||| ||||| ||| ||| |||| | || || || |||||||||| || |||| Sbjct 51814741 TATATATTATATATAATATAATATAAATAATATTATATT-TATATATTATAAATATATAT 51814683 Query 47179 taaaatatat 47188 || | |||| Sbjct 51814682 TACATAATAT 51814673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899457780530880