Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1685 149 9e-31 seq1724 127 3e-24 >seq1685 Length=141252148 Score = 149 bits (164), Expect = 9e-31 Identities = 300/443 (68%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || ||||||||||||| ||||| ||||||||| || ||||| || |||||| Sbjct 47456950 AAGCAAGCAAAATCAGTGT--AAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTG 47456893 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| | |||| ||| || ||||| ||||||||||| ||| ||| |||||| Sbjct 47456892 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAG 47456833 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 || || || || || ||| ||||| |||| | | |||| || | || | ||| Sbjct 47456832 AAGATGCCTTCTACTGCA-GCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTC 47456774 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | ||||| ||||| ||| | | | ||| || || | || || || Sbjct 47456773 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGC 47456714 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| || | | || |||||||| |||||| || |||||||| || | | | ||| Sbjct 47456713 ATTGAAGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 47456654 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||||||||| ||||||| || || || || | ||| || | | || || | Sbjct 47456653 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 47456594 Query 18514 ATATTGA---ATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 | ||| || | ||| ||||| || |||||||| ||||| ||||| || || Sbjct 47456593 AATCTGAACTATTTGGCT---AAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCT 47456537 Query 18571 AGATGCGAAAAATGCCAAAACAT 18593 | ||| || || ||| ||||| Sbjct 47456536 TGCTGCAAAGAAAACCAGAACAT 47456514 >seq1724 Length=455154 Score = 127 bits (140), Expect = 3e-24 Identities = 276/412 (67%), Gaps = 8/412 (2%) Strand=Plus/Plus Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||||||| ||||||||| ||||||||| || | ||| || |||||| | || Sbjct 265709 GCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCA 265768 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||| | |||| ||| || ||||| ||||||||||| ||| || |||||||| || Sbjct 265769 GGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATG 265828 Query 18281 CCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTAT 18339 || || || ||| || || |||| | | |||| || | | | ||| | || Sbjct 265829 CCTTCTACTGCA-GCAAAGGCTACAACACGTTCACCATAGATAGCCTCTTTGTCCCCAAT 265887 Query 18340 CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAA 18399 ||| || || ||| | | | || || || | || || |||||||| Sbjct 265888 CCAGCACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAA 265947 Query 18400 CAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTC 18459 | | || ||||||||| |||||| || |||||||| || | | | ||||||||| Sbjct 265948 GAGAAATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTC 266007 Query 18460 AGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTG 18519 |||||||||| ||||||| || || || || ||| || | | || || | | || Sbjct 266008 AGAATGTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTG 266067 Query 18520 A---ATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | || | ||| ||||| || |||||||| ||||| ||||| || ||| Sbjct 266068 AACTATTTGGCT---AAATCGCTCCACCAAATTTTCATTTACTATGCCATCA 266116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731712049374400