Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1399 127 4e-24 seq565 109 1e-18 seq192 100 5e-16 seq1685 95.1 2e-14 >seq1399 Length=81552678 Score = 127 bits (140), Expect = 4e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | |||| || || ||||| | ||||| |||||| |||||| Sbjct 71370959 TTTCTTAGCACCACCACACAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATT 71371018 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || | || |||| ||| | || |||| ||| || |||||||| || ||| || || Sbjct 71371019 GTAGCCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTG 71371078 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 71371079 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 71371138 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | || || || ||||| || || | | ||||| | ||| ||||||||||| Sbjct 71371139 GGATTCAGCCTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 71371198 Score = 93.3 bits (102), Expect = 8e-14 Identities = 212/301 (70%), Gaps = 31/301 (10%) Strand=Plus/Minus Query 126953 TAACtatttataa-ataatgaatattgataaatgtattaatgaatatgataaacctatat 127011 ||| ||| ||||| ||||| |||| |||| | ||| || ||||| ||| | |||| Sbjct 11346782 TAATTATATATAATATAATATATAT--ATAATTATAT--AT-AATATAATATATATATA- 11346729 Query 127012 attatacttactatgatttatatagaaatatgaatgatataatttacaattatgataata 127071 |||||| || ||| || |||||| || ||| || ||||||| || ||| ||||| Sbjct 11346728 ATTATATATAATATAATATATATATAATTATATATAATATAATATA----TAT-ATAATT 11346674 Query 127072 ATATTGTTAAAACATATATGGATATTTTATTATCTCAAATACAATTTTTATCAACTATAA 127131 |||| ||| | | |||| |||| | ||||| | |||| ||| | ||| | |||| Sbjct 11346673 ATATA--TAATATA-ATAT--ATATATAATTATATATAATATAATATATATATATTATAT 11346619 Query 127132 ATATTaaaaaa-aTATGTAAT-ACATATTCGAATAGAATGGTACATATATTATATATAGG 127189 ||| || || | |||| |||| | |||| |||| ||| || |||||||||||||| Sbjct 11346618 ATAATATAATATATATATAATTATATAT---AATATAATA-TATATATATTATATATAAT 11346563 Query 127190 ATCATCTAAAGCGTATCATTTCAATATATTGAATAATTTATATAAAAATTTAACTAATAT 127249 || || || | ||| ||| |||||| ||||| ||||||| || || |||||| Sbjct 11346562 ATAATATATA---TATAATT---ATATATAATATAATATATATAATCATATA--TAATAT 11346511 Query 127250 A 127250 | Sbjct 11346510 A 11346510 >seq565 Length=117381234 Score = 109 bits (120), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | | ||| ||| || |||||| Sbjct 72458859 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGAATATT 72458800 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || | || |||| ||| | || |||| || || |||||||| || | ||| || || Sbjct 72458799 GTAGTTAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTG 72458740 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| | || || |||||||| ||| |||| || Sbjct 72458739 ATCAGGAGGAATTCCTTCCTTATCCCGGATCTTGGCCTTTACATTTTCTATCATATCCGA 72458680 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 72458679 GGGTTCATCCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 72458620 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | | ||| ||| || |||||| Sbjct 50944608 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGAATATT 50944549 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 | || || |||| ||| | || |||| || || ||||||| || | ||| || || Sbjct 50944548 GTGGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAGGATCAGTCTTTGCTG 50944489 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || || ||||| | | ||||| || Sbjct 50944488 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCTGTCGTATCCGA 50944429 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || || || || || || | ||||| | ||| ||||||||||| Sbjct 50944428 GGGTTCAACCTCGAGGGTGATAGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 50944369 >seq192 Length=157873769 Score = 100 bits (110), Expect = 5e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||| | Sbjct 100760694 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACT 100760635 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || |||||||| || | ||| || | Sbjct 100760634 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTT 100760575 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||| || Sbjct 100760574 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGA 100760515 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| | || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 100760514 GAGTTCAGTCTTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 100760455 >seq1685 Length=141252148 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| | | | ||| | || || ||| || ||| || Sbjct 2033718 TTTCTTAGCACCACCACAAAGTCTCGACAGAAGATGAAGAGGAGGCTCCTTTTGAATGTT 2033659 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 | || || ||| | | | || |||| || || |||||||| || | ||| || || Sbjct 2033658 GCAGTCGGACGAAGTACATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGATG 2033599 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| ||||| || || || |||||||| ||| | |||||| Sbjct 2033598 AGCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGA 2033539 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || ||| ||||| | ||| ||||||||||| Sbjct 2033538 GGGTTCAACCTCAAGGGTGATGGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCATTTT 2033479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904938182527200