Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1503 275 7e-69 seq334 154 2e-32 seq254 154 2e-32 >seq1503 Length=86207423 Score = 275 bits (304), Expect = 7e-69 Identities = 254/322 (79%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||| |||| || || ||| | |||||||| Sbjct 9282120 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGTACACACCTGCTTCCTTAAAATGCTCT 9282061 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| | || ||||| || |||||||||| || | | ||| Sbjct 9282060 CTGCAAAATGCCCAGGAAGCCCTCATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 9282001 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| ||||||||| ||||||| || ||||||||| Sbjct 9282000 GAAAACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGAC 9281941 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||| Sbjct 9281940 AAGATAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACC 9281881 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| | |||||| ||||| Sbjct 9281880 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCA 9281821 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || |||||||||||| ||| Sbjct 9281820 GGAACAGCCTGCCTCACCGTCT 9281799 >seq334 Length=143122389 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 54996874 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 54996933 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| || || ||| ||||| ||||||||||| |||| Sbjct 54996934 TGCCCCAAGCTGAGAACCA------------AGACCCAGACATCAAGGAGCATGTGAACT 54996981 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| ||| |||| || ||||||| ||||| ||| Sbjct 54996982 CCCTGGGGGAGAAGCTGAAGGCCCTCAGGCTGAGGCTACGGCGCTGT 54997028 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||| Sbjct 54996520 CAAATGAAGGATCAGCTGGACAACATGTTGTTAAAGGAGTCCTTGCTGGAAGACTTTAAG 54996579 Query 178233 G 178233 | Sbjct 54996580 G 54996580 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || | |||||||| ||||||||||||||||| || || ||||||| Sbjct 54999203 AGCTCCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGATATCTTCATCAACTACA 54999262 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 54999263 TAGAAGCCTACATGACAA 54999280 >seq254 Length=152096393 Score = 154 bits (170), Expect = 2e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 60593025 CTTCAGGCCCGTGATGTGTGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 60592966 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| | || Sbjct 60592965 AGGCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 60592906 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||||| || ||||||||||| Sbjct 60592905 CACCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 60592861 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| || |||| || ||||||| |||| ||||| | Sbjct 106321871 GTACTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCTGGTCCTTGT 106321930 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||| ||||| ||| | ||||||||| || ||| Sbjct 106321931 GCAATACAAGAGGCTCAAAAACATGACCAGCATCTACCTCCTGAACCTGGCCATTTCTGA 106321990 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 |||||| | | ||||| || ||||| ||||| Sbjct 106321991 CCTGCTCTTCCTGTTCACGCTGCCCTTCTGGAT 106322023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 8641 GGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAAC 8700 ||||||| ||||| | | ||||||||| ||||| ||||||| | || ||||||||| Sbjct 106272087 GGCAATGTGGTGGTGGTGATGATCCTCATAA-GTACAGGAGGCTCCGAATTATGACCAAC 106272029 Query 8701 ATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 |||| |||| |||||||||| || |||||||| | | |||||||| || || ||| Sbjct 106272028 ATCTACCTGCTCAACCTGGCTATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGG 106271969 Query 8761 ATTCACT 8767 || |||| Sbjct 106271968 ATCCACT 106271962 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 60588865 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGTG 60588806 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | ||| || |||| || | ||| |||||||| ||||||| Sbjct 60588805 GAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 60588746 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || ||||| |||| | ||||| ||| ||| || Sbjct 60588745 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCCTGGAAGA 60588706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583360478697600