Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1724 343 2e-89 seq1685 340 2e-88 seq1399 138 2e-27 seq1162 116 5e-21 seq1115 105 9e-18 >seq1724 Length=455154 Score = 343 bits (380), Expect = 2e-89 Identities = 638/934 (68%), Gaps = 12/934 (1%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| |||||| ||||||| | |||| ||| ||| | | ||||| |||||||| Sbjct 265362 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTTTCTGTTGGACTTGACACCACTCCCATCC 265421 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || | | |||| || || ||||| ||| || ||| ||||| | Sbjct 265422 TCTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCT 265476 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| || | | | | || |||| || | ||| | | Sbjct 265477 CCATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAGCCTAA 265536 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| |||| ||||| || ||| || ||||| | |||||||| || ||||| | Sbjct 265537 GTCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 265596 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | | || | ||||| || || || || | ||| || | || || | | ||| | Sbjct 265597 TCATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTGTTT 265656 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | | ||| ||| || ||| |||| | | ||| ||||| |||||| | || | Sbjct 265657 CTCTCACTCTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCAG-CAAAAT 265715 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| ||||||||||| ||||| | ||| || ||||| ||||| |||||||| | Sbjct 265716 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCATCA 265775 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||||| || ||||||||||||||||||| Sbjct 265776 GTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCTA 265835 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCT 39803 |||| ||||| || |||| | || || || | | || || | ||||| | Sbjct 265836 CTGCAGCAAAGGCTACAACACGTTCACCATAGATAGCCTCTTTGTCCCCAATCCAGCACA 265895 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 || ||||| || |||||||| || |||||||| ||||| || |||||||||||| | | Sbjct 265896 AGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAAATT 265955 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| | || || || || | |||||||||||||| ||||| | Sbjct 265956 CCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 266015 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || | || ||||| | ||||| ||||| || || | Sbjct 266016 TGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTATTT 266075 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||||| ||| ||||||||||||| ||||| |||||||| || ||||| || ||| Sbjct 266076 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 266135 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 | | | ||||||||| | || ||||| ||| | ||||| | || || | Sbjct 266136 GAAGACGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGTCCT 266195 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || | || || || || | ||||| || || |||||||||||||| ||||| | || Sbjct 266196 TGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATACATCTGCC 266255 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | || | || || || | ||||| Sbjct 266256 AGATATCATGGTACTCGATGGGGAAGACGACAAA 266289 >seq1685 Length=141252148 Score = 340 bits (376), Expect = 2e-88 Identities = 640/936 (68%), Gaps = 20/936 (2%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT---CTTGTGACATAACTCCCATTT 39326 |||| |||||| ||||||| | |||| ||| | || |||| ||| |||||||| Sbjct 47457290 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTGTTGGACTTG--ACACCACTCCCATCC 47457233 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || | || || | |||| || || ||||| ||| || ||| ||||| | Sbjct 47457232 TCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCT 47457178 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 ||| || ||||| || | | | | || |||| || | ||| || | Sbjct 47457177 ACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 47457118 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| ||||| || |||||| ||||| | |||||||| || ||||| | Sbjct 47457117 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 47457058 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||||| || || || || | ||| || | || || | | ||||| Sbjct 47457057 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 47456998 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | | ||| ||| || || || | | ||||| ||||| ||||| || || | Sbjct 47456997 CTCTCACTCTCTCCTCCGATAGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 47456938 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 || |||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||| | Sbjct 47456937 CAG--TGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGGCATCA 47456880 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||||| | ||||||||||||||||||| Sbjct 47456879 GTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCCTTCTA 47456820 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCT 39803 |||| || || || |||| | || || || | | || || | ||||| | Sbjct 47456819 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCCAATCCAGCGCA 47456760 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || |||||||| ||||||||||| ||||| || ||||| |||||| | | Sbjct 47456759 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 47456700 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| | || || || || | |||||||||||||| ||||| | Sbjct 47456699 CCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 47456640 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || || ||||| | ||||| ||||| || || | Sbjct 47456639 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 47456580 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||||| ||| ||||||||||||| ||||| ||||| || || ||||| || ||| Sbjct 47456579 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAACCA 47456520 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT--CATTGATATC 40101 ||||| ||||||||| | || |||| ||| | ||||| || || || Sbjct 47456519 GAACATGGGATATAAAATATCTCTCCCCGGGCTTCAGGGATTCCCAGTGCCA---ATGTC 47456463 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 || || | || || || || | ||||| || || ||||| ||||| || ||||| | Sbjct 47456462 CTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTG 47456403 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| ||| || | || | || ||||| || ||||| Sbjct 47456402 CCAGATACCATGGTACTCGATGGGAAAGATGACAAA 47456367 Score = 215 bits (238), Expect = 7e-51 Identities = 391/564 (69%), Gaps = 10/564 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||| ||| |||| |||||||| || || | | ||| | ||||||||||| Sbjct 130531237 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAG 130531178 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || | || |||||||| ||||| |||||||| ||||||||||| Sbjct 130531177 GCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAA 130531118 Query 39736 GATGCCTTCTACTGCTGCAAA---TGCAACAAG-TCTCTCTCCGTAACTTGTATCATTAT 39791 | ||| ||| ||| ||||| ||||||| | |||| | ||||| | | | || Sbjct 130531117 GGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCT-TTGTTCC 130531059 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | ||||| | || |||||||| |||| |||||| ||||| | |||| Sbjct 130531058 CAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAACGGCAT 130531000 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||| | | | |||| | |||||||| ||||| || || | ||||||| | Sbjct 130530999 TGAAGATAAATTCCCTTTCTTTGTTATCTTTA--ATATGCGTCAATAAGGAGACTATTTA 130530942 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || ||||| |||||||| || || || || || || || || || | ||| |||| Sbjct 130530941 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 130530882 Query 39972 TTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 | || || || ||||| |||| |||| |||| ||||||| | ||| ||||||| || Sbjct 130530881 TCTGAACTTCTTGAAC-AAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCT 130530823 Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAG 40090 ||||| || |||| | ||| ||||||||| ||| || || ||| | |||| Sbjct 130530822 GCAAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAG 130530763 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 | || || || || | || || || | || |||| || || ||||| | || Sbjct 130530762 TGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAGACCTCTACTTTC 130530703 Query 40151 TTGTACATGTTCCATATATCACGA 40174 || ||||| ||||| |||||| || Sbjct 130530702 TTATACATTTTCCAAATATCATGA 130530679 >seq1399 Length=81552678 Score = 138 bits (152), Expect = 2e-27 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || | Sbjct 9735778 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9735719 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 9735718 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 9735659 Query 39759 CAACAA 39764 | |||| Sbjct 9735658 CTACAA 9735653 >seq1162 Length=100215132 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 56822258 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 56822317 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| | |||||||| || ||||| || Sbjct 56822318 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGCC 56822377 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 56822378 ACCACTCTTTCCCC 56822391 Score = 98.7 bits (108), Expect = 1e-15 Identities = 242/363 (67%), Gaps = 7/363 (2%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| ||| || || ||||| ||| | || || || || |||| | | ||| Sbjct 7502484 TTAATTCTTTCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTGTCATCCAAGGCTTG 7502425 Query 37398 TACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCC 37457 ||||| | | || |||||| | || ||| | || ||||| || |||| ||| || Sbjct 7502424 AACTTCTTCTATTTCTGGATAAAAAATCTGTTCGCAAATGAGCTGTGCAATTCGATCACC 7502365 Query 37458 CGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCT 37517 | || | || ||| || ||| ||| ||| | ||| | || |||| ||| || || Sbjct 7502364 TTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCT 7502305 Query 37518 ATAATCTTCATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAACCCGA 37574 |||||||||||| || || || |||||||||||||| |||| || ||| || || Sbjct 7502304 ATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGA 7502245 Query 37575 TCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAAT 37634 | | ||| | |||||||||||| | | | ||| |||| || ||||| | Sbjct 7502244 CCGTGAAGCCACTCTTCCATAACACCCAGAAAGGAACGCTATCTGAATGTCCGTTTTCA- 7502186 Query 37635 CAATTGTCTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCC 37692 ||| | |||||||| ||| || || || ||||| || || || || | || || || Sbjct 7502185 CAAGAG-CTTTCTCCATAGGTAGTATTGTGTAATCATAAGCACTGTACAGGTCGTAGCCT 7502127 Query 37693 GCG 37695 ||| Sbjct 7502126 GCG 7502124 >seq1115 Length=110690730 Score = 105 bits (116), Expect = 9e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || |||||||| | | Sbjct 66318554 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAAGA 66318495 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 66318494 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 66318435 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || |||||||||| Sbjct 66318434 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 66318387 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 66333963 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 66333904 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 66333903 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 66333844 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 66333843 TCCAGGTAAATAGC 66333830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686758676081760