Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1724 279 4e-70 seq1685 273 2e-68 seq1399 113 4e-20 seq254 98.7 8e-16 seq1 87.8 1e-12 seq1162 86.0 5e-12 >seq1724 Length=455154 Score = 279 bits (308), Expect = 4e-70 Identities = 609/895 (68%), Gaps = 28/895 (3%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||||| || || || | || ||||| || ||||| ||||| ||||| ||| |||| Sbjct 266289 TTTGTCGTCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAAAAGGCAGAGGCT 266230 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || || ||||| | || || || || || | || ||| | ||||| | ||| | | | Sbjct 266229 TCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCAGCAC-TGGGAATCCCT 266171 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 || || | || | | |||||||||| || ||| || ||||| || || || | Sbjct 266170 GAAGCCCG-AGGAGAGATATTTTATATCCCGTCTTCTGGTTTTCTTTGCAGCAAGTGATG 266112 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||||| |||||||||||||| || ||| ||| |||||| ||||| |||||| Sbjct 266111 GCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTAC-AGAAGCC 266053 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 | ||||| |||| || ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 266052 TGCTGTTTCTATGTCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTC 265993 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || || || || ||||||||||||| | || | | | | |||||||| || ||| Sbjct 265992 CTTATTGACACTTACATCAAAGATGCCAAAGAAAGGGAATTTCTCTTTAATGCCATCGAA 265933 Query 44057 ACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA 44115 || | || |||| | || | || ||||| || ||| | ||||| || || Sbjct 265932 ACGATGCCTTGCG-TCAAGAAGAACGCAGATTGAGCCTTGTGCTGGATTGGGGACAAAGA 265874 Query 44116 TTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 || | ||| ||||| |||| || ||||| | || |||||||| |||||||| || Sbjct 265873 GGCTATCTATGGTGAACGTGTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCCGG 265814 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 || ||||| | ||||| ||| | ||||||||||| |||||||||| | |||||||| Sbjct 265813 TTCTTTTGCATCGATATTGTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTC 265754 Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGG 44292 ||||| | || || | ||||| || ||||| || |||||||| |||||| | | Sbjct 265753 GAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGC-TGCTTGATGTTCAA 265695 Query 44293 ATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGT 44352 ||| || || | | || || || ||| | | | ||| | || | | || || Sbjct 265694 ATACCT-GGTG--CACAAACCATCGGAGGAGAGAGTGAGAGAAACAATTATCAATGCTGT 265638 Query 44353 AAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TG 44411 |||||||||| ||||| | || || || ||| | || | || || ||||| || Sbjct 265637 TCAGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTATGAAGCTCATTGGGATGAATTG 265578 Query 44412 AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTT---TTGGAACTGG 44468 || | | ||||| |||| ||||| | | |||| | |||| ||||||||| Sbjct 265577 CAC-TCTAATGAAGCAATGCATTGAGTTTGTGGCAG---GCAGACTTAGGCTGGAACTGG 265522 Query 44469 GTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGG 44528 ||| ||| | ||| | | ||| ||||| |||||||| |||||||| || Sbjct 265521 GTTTTAGTAAGGTTTTCGGGGTAGAGAGCCCATTTGACTTTATGGAGAATATTTCACTGA 265462 Query 44529 AAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583 ||| || ||||| ||||| | | | ||||| |||||| | ||||| || Sbjct 265461 AAG-----ACTAACTTCTTTGAGAGGAGAGGAGGAGAGTATCAGAGGATGGGAGT 265412 >seq1685 Length=141252148 Score = 273 bits (302), Expect = 2e-68 Identities = 618/917 (67%), Gaps = 28/917 (3%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | || ||| || | | |||||| | ||||| || | || |||| || |||| Sbjct 47456344 TGCTGAGAGGAAACCCCTGCCGCTTTGTCATCTTTCCCATCGAGTACCATGGTATCTGGC 47456403 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || |||| || || ||||| | || || || || || | || | Sbjct 47456404 AGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGG 47456463 Query 43797 AC-TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || || |||| | ||| | | | || || || | | |||||||||| ||| || Sbjct 47456464 ACATTGGCAC-TGGGAATCCCTGAAGCCCGGG-GAGAGATATTTTATATCCCATGTTCTG 47456521 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 | || ||||| || ||||| || ||||| |||||||||||||| || ||| ||| Sbjct 47456522 GTTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAA 47456581 Query 43916 GAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 |||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| || Sbjct 47456582 ATAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACAT 47456640 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| |||||||| ||||| || || || || |||||||||||| | || | | | Sbjct 47456641 ACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATCAAAGATCTCAAAGAAAGGGA 47456700 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 | || ||||| || ||||| | ||| | || | || ||||| |||||| | Sbjct 47456701 ATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTT 47456760 Query 44095 TAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 ||||| | | | | | | ||| ||||| |||| || || || | || Sbjct 47456761 GCGCTGGATTGGGGACAAAGAGGCCACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGT 47456820 Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 |||||||| |||||||| | || ||||| | ||||| ||| | ||||||||||| | Sbjct 47456821 AGAAGGCATCTTCTTTTCCAGTTCTTTTGCATCGATATTGTGGCTCAAGAAACGAGGACT 47456880 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 ||||||||| | |||||||| ||||| || || || | ||||| || ||||| | || Sbjct 47456881 GATGCCTGGCCTCACGTTTTCCAATGAATTTATTAGCAGAGATGAGGGTTTACACT--GA 47456938 Query 44272 TTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTAC 44331 ||||||||||||| | | | | || | | || || | || ||| | | | Sbjct 47456939 TTTTGCTTGCTTGATGTTCAAACACCTGGTACAC---AAACTATCGGAGGAGAGAGTGAG 47456995 Query 44332 AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGT 44391 ||| || || | | || || |||||||||| ||||| | || || || ||||| Sbjct 47456996 AGAAATAATTATCAATGCTGTTCAGATAGAACAGGAATTCCTCACCGAGGCCTTGCCTGT 47457055 Query 44392 AAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATC 44450 || | || || ||||| || || | | ||||| ||||| ||||| | | ||||| Sbjct 47457056 GAAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGACA 47457114 Query 44451 GTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGAT 44506 | | | |||||||||||| | | || | || ||| | | ||| ||||| Sbjct 47457115 GACTTATGCTGGAACTGGGTT----TTAGCAAGGTTTTCGGAGTAGAGAGCCCATTTGAC 47457170 Query 44507 TTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAA 44566 |||||| | |||||||| || ||| || ||||| ||||| | | || || | Sbjct 47457171 TTTATGTAGAATATTTCACTGAAAG-----ACTAACTTCTTTGAGAGGAGAGTAGGCAAG 47457225 Query 44567 TATCAGCGAATGGGCGT 44583 |||||| | ||||| || Sbjct 47457226 TATCAGAGGATGGGAGT 47457242 Score = 161 bits (178), Expect = 8e-35 Identities = 381/568 (67%), Gaps = 12/568 (2%) Strand=Plus/Plus Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 |||||| || ||| ||||||| || |||| | ||| || || |||| || | || || Sbjct 130530679 TCATGATATTTGGAAAATGTATAAGAAAGTAGAGGTCTCTTTCTGGATGGCCCAGGAGGT 130530738 Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840 || || | || ||| || |||| ||| || | || || | ||| | ||||| Sbjct 130530739 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGTAAAGATATTTT 130530796 Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900 ||||| || |||| || ||||| || | || |||||| | ||||||| ||||| Sbjct 130530797 ATATCCCATATTCTGGCTTTCTTTGCAGCATGTGATGGGATAATAGATGAAAACTTGGTG 130530856 Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959 | |||| ||||||||||| |||| ||||| | || || ||||| || ||||| Sbjct 130530857 GAACAATTTGTTCAAGAAGTTCAGATTA-CAGAAACCTTCTGCTTCTATGGCTTCCAAAT 130530915 Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| |||||||| || ||||| || || | ||||| || || | ||| | || ||||| Sbjct 130530916 TGCTATAGAAAACATACATTCTGACATAAATAGTCTCCTTATTG--ACGCATATTAAAGA 130530973 Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079 | | || | | | | || ||||| | ||||| | |||| | | || | || Sbjct 130530974 TAACAAAGAAAGGGAATTTATCTTCAATGCCGTTGAAACGATGCCTGTG-TCAAGAAGAA 130531032 Query 44080 AGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGT 44136 |||| |||| | | ||||| || | | | | | ||||||||| ||| Sbjct 130531033 GGCAGGTTGGGTCTTGTGTTGGATTGGGAACAAAGACGTTACCCATGGAGAACGTGTTGC 130531092 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 || ||||| | |||||| ||| |||||||| || || ||||| ||||| ||| | Sbjct 130531093 AGCCTTTGCCCTAGTGGAAAGCACCTTCTTTTCTGGTTCTTTTGCATTGATATTCTGGCT 130531152 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||||| ||| |||||||||| | || ||||| | ||| | | || ||||||| Sbjct 130531153 CAAGAAACAAGGACTGATGCCTGGCCTCACATTTTCCAGTGAACTTTTCAGCAGTGATGA 130531212 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTTG 44284 || ||||| || | ||||||||| || Sbjct 130531213 GGGTTTACACTGTTACTTTGCTTGCCTG 130531240 >seq1399 Length=81552678 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 9733251 CAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 9733309 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 9733310 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 9733358 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 9735643 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 9735702 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 9735703 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 9735762 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 9735763 ATTAGCAGAGATGA 9735776 >seq254 Length=152096393 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 60592859 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 60592918 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| ||||| || || || ||||| || | Sbjct 60592919 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 60592978 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| |||||||||||| Sbjct 60592979 GCTACGCCCTGCTCACGTACATGATTGCACAC 60593010 >seq1 Length=122973662 Score = 87.8 bits (96), Expect = 1e-12 Identities = 185/274 (68%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | || || ||||||| || | |||| || ||| | ||||| | || || ||| Sbjct 74373004 GTGCTCCAGTTCCTAGGACTCTACAAGAAATGTGGAAAACTTGTATTTTTGGGTTTGGAC 74372945 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAA---TACA-ATTGCATGAAAGAGCA 47331 || ||||| ||||| | | | |||||||||||| ||| |||| | || || Sbjct 74372944 AACGCAGGCAAAACCACTCTTTTTCACATGCTCAAAGATGACAGATTGGGTCAA----CA 74372889 Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391 | || ||| ||||| ||| || ||| | |||| ||||||||| || || |||| || Sbjct 74372888 TGTTCCAACACTACATATGACATCAGAAAAGCTAATAATTGCTGGAATGACTTTTACAAC 74372829 Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451 |||||| | || ||||||| ||||| || | || |||||||| | | | | Sbjct 74372828 TTTTGATCTTGGCGGACACAGGCAAGCATGTCTGGTTTGAAAAAATTATCTCCCAGCAAT 74372769 Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGAT 47485 | ||| || |||| | | || || | ||||||| Sbjct 74372768 TAATGAGATTGTTTTTCTGGTGGATTCTGCAGAT 74372735 >seq1162 Length=100215132 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 56811436 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 56811377 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 56811376 AACGAGTTTCGGAGTATCAGCG 56811355 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 56835680 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 56835621 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 56835620 CTTCCTTCTGGACAGCAGAAGAGGT 56835596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397371307591420