Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1724 96.9 4e-15 seq254 95.1 1e-14 seq1399 91.5 2e-13 seq1685 87.8 2e-12 >seq1724 Length=455154 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||||||||||| ||||||||||| ||||| || ||| Sbjct 265727 CCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTC 265786 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || || | || ||||| |||||||||||||| || |||||| Sbjct 265787 TTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCTACTGCAGCAAAG 265846 Query 74889 GCGACAAGGCGTT 74901 || |||| |||| Sbjct 265847 GCTACAACACGTT 265859 >seq254 Length=152096393 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || |||| ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 127009522 GTGAAAATATAACGGGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 127009463 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 127009462 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 127009403 Query 152149 ATCGT 152153 || || Sbjct 127009402 ATAGT 127009398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||| | |||||||||||| ||||||||| ||| || || || || || Sbjct 127009522 GTGAAAATATAACGGGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 127009463 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 127009462 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 127009403 Query 117425 ATCGT 117429 || || Sbjct 127009402 ATAGT 127009398 >seq1399 Length=81552678 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 9735776 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 9735717 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || |||||| |||||||||||||| || |||||||| Sbjct 9735716 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 9735657 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 9735656 ACAACACGTT 9735647 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | || || | |||||||||||| |||| || |||||||| Sbjct 34158592 GTAAAGATGTATCGTGGACTAGCGGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 34158533 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 34158532 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 34158473 Query 152149 ATCGT 152153 || || Sbjct 34158472 ATGGT 34158468 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || ||||| || | || || | ||||||||||||| || | ||||| || || Sbjct 34158592 GTAAAGATGTATCGTGGACTAGCGGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 34158533 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 34158532 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 34158473 Query 117425 ATCGT 117429 || || Sbjct 34158472 ATGGT 34158468 >seq1685 Length=141252148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || |||||||| ||||||| ||||||||||| ||||| || ||| Sbjct 47456928 CCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTC 47456869 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || || | || |||| |||||||||||||| || || ||| Sbjct 47456868 TTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCCTTCTACTGCAGCGAAG 47456809 Query 74889 GCGACAAGGCGTT 74901 || |||| |||| Sbjct 47456808 GCTACAACACGTT 47456796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547096405943200