Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1503 208 6e-49 seq254 118 9e-22 seq1553 111 1e-19 >seq1503 Length=86207423 Score = 208 bits (230), Expect = 6e-49 Identities = 377/547 (69%), Gaps = 7/547 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || |||| |||||||| || || || || | ||||| Sbjct 27530526 CTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATCGGCAAGAACGGGGACCTGCCC 27530585 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || |||||||| | |||| || | |||||| | ||||||| Sbjct 27530586 TGGCCGCCGCTCCGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACTTCTTCAGTA 27530645 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || | |||| | | | Sbjct 27530646 GAAGGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTC-CATCCC-TGAGA 27530703 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| | | ||||| ||| | |||||||| ||| | || || || || | Sbjct 27530704 AGAATCGACCTTTAGAGGATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 27530763 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | || ||| | || Sbjct 27530764 CACAAGGAGCTCATTTTCTTGCCAGAAGTTTGGATGATGCCTTAAAACTTACTGAACAAC 27530823 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||| Sbjct 27530824 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 27530883 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | | || || | | | || ||| | |||||||| |||| | |||| Sbjct 27530884 AAGCCATGAATCGCTCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTTTG 27530943 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| | | || |||||||| | | ||||| |||| || | |||| | Sbjct 27530944 AAAGTGACATGTTTTTTTCAGAAATTGACTTGGAGAAATATAAACTTCTGCCAGAATACC 27531003 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 ||||||||| ||||| || || || || || || |||| ||||||||||| |||||| Sbjct 27531004 CAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATG 27531063 Query 2675 aaaaaaa 2681 | || || Sbjct 27531064 AGAAGAA 27531070 Score = 176 bits (194), Expect = 4e-39 Identities = 192/254 (76%), Gaps = 1/254 (0%) Strand=Plus/Minus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 ||| ||| || |||| ||||||| |||||||| ||| ||||| ||||||||||| Sbjct 9282055 AAATGCC-CAGGAAGCCCTCATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAA 9281997 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||| || || | |||| ||||| || | ||||| || || || || || | Sbjct 9281996 ACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGACAAGA 9281937 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| || |||| ||||| |||||| |||| || ||||||||||| | || ||| Sbjct 9281936 TAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGG 9281877 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||||||||| |||| |||| | || || || ||||| | ||||||||| ||||||| Sbjct 9281876 AGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCAGGAA 9281817 Query 1510 TAGGGTGTCTAACC 1523 || || || ||| Sbjct 9281816 CAGCCTGCCTCACC 9281803 >seq254 Length=152096393 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 16750492 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 16750551 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 16750552 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 16750611 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 16750612 ATCGCCCTGTGGATGACTGA 16750631 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || ||||| Sbjct 60593021 AGGCCCGTGATGTGTGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 60592962 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| | Sbjct 60592961 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 60592902 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 60592901 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 60592861 >seq1553 Length=133034539 Score = 111 bits (122), Expect = 1e-19 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492 |||||||||| | | | || || | |||||||||| ||||||| || ||||| ||| | Sbjct 48235480 ACCAGAATTAGCAAATAAAGTAGAGATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAA 48235539 Query 2493 GGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATT 2552 ||| ||| | | || | | | || ||| | |||||||| |||| | || Sbjct 48235540 GGAAGCCATGAATCACCCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTT 48235599 Query 2553 TGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612 |||| |||| || || || ||||||||| || | ||||| |||| || | |||| Sbjct 48235600 TGAAAGTGACACGTATTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATA 48235659 Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATA 2672 |||||||||| ||||| || || || || || || || | ||||||||||| |||| Sbjct 48235660 CCCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATAAAGTACAAATTTGAAGTATA 48235719 Query 2673 TGaaaaaaa 2681 ||| || || Sbjct 48235720 TGAGAAGAA 48235728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414388480692976