Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq91 104 2e-17 seq683 100 2e-16 seq1611 95.1 1e-14 seq1 95.1 1e-14 seq254 86.0 5e-12 >seq91 Length=163208435 Score = 104 bits (114), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| ||||||| || | ||| |||||| || || || || || | Sbjct 66929496 GCCACCTCGCAGGCGCAACACCAGGTGCCGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 66929555 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || ||||||||||| |||||||| |||||||||||||| ||||| Sbjct 66929556 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 66929615 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| ||||| ||||| ||||| || | | || || || | ||| | Sbjct 66929616 G-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 66929674 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | || | ||||| |||| | || || || || |||||||| ||||| ||| || Sbjct 66929675 CCTCAAGGGTGATGGTTTTGGCTGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 66929730 >seq683 Length=106955855 Score = 100 bits (110), Expect = 2e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 39049 TTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTA 39108 ||| | | ||| |||| | || | ||||| || || ||| |||||| || ||||| Sbjct 89490425 TTAATAATGCCACCTCGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATATTC 89490484 Query 39109 TAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGG 39168 || || | || | || | || || |||||||||||| ||||||| |||| ||||||| Sbjct 89490485 TAGTCTGAGAGACTGCGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGG 89490544 Query 39169 TCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTC 39228 || | | | || ||| ||||| |||||| ||||| || | | || || || Sbjct 89490545 TCAGGCAGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTG 89490604 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | |||||| || | ||| | | || ||||| || || || |||||||| ||||||| Sbjct 89490605 GGCTCCACCTCAAGGGTGTTGGTCTTGCCCGTGAGGGTGTTCACAAAGATCTGCATCT 89490662 >seq1611 Length=34552619 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | | | ||||||| || || ||| |||||| || ||||| || || | Sbjct 276739 GCCACCTCGCAGGTGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 276798 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || |||| || ||||||||||| |||||||| ||| |||||||||| ||||| Sbjct 276799 GAGAGTGCGGCCGTCCTCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGG 276858 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | || | ||| ||||| ||||| | ||| || | | || || | ||| | Sbjct 276859 G-ACACCCTCCTTGTCTTGAATTTTGGCTGTGACATTCTCAGTGATGTCACTGGGCTCGA 276917 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| |||| ||| | || || || |||||||| ||||| Sbjct 276918 CCTCAGTGGTGATGGTTTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 276966 >seq1 Length=122973662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || | ||| || ||| || || || || || | Sbjct 23279016 GCCACCTCACAGGCGCAGCACCAGGTGCGGGGTGGGCTGTTTCTGGATGTTGTAGTCTGA 23278957 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || ||||||||||| |||||||| |||||||||||||| ||||| Sbjct 23278956 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGG 23278897 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| ||||| ||||| |||| || | | || || || | ||| | Sbjct 23278896 G-ATACCCTCCTTGTCTTGAATTTTGGCATTGACATTCTCAATGGTGTCACTGGGCTCGA 23278838 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || ||||| || || || |||||||| ||||||| Sbjct 23278837 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 23278787 >seq254 Length=152096393 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| |||||| | || || || || | || ||||| | || || Sbjct 125219703 CACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGTAGTCTGAGAGAGTTCGGCCATCCTC 125219762 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| |||| ||| ||| |||||||||| |||||| | | ||| ||||| Sbjct 125219763 CAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGG-ATAC-CTCCTTGTCTT 125219820 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||| ||||| || | | || || || | ||| || || | ||||| | | Sbjct 125219821 GAATTTTGGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGAGTGATGGTCT 125219880 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | ||||| || || || |||| ||| ||||||| Sbjct 125219881 TGCCCGTGAGGGTCTTCACAACGATCTGCATCT 125219913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429454069738892