Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq254 145 6e-30 seq1503 118 9e-22 >seq254 Length=152096393 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||| Sbjct 60593021 AGGCCCGTGATGTGTGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 60592962 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || |||||||| |||||||| || ||||| | || | Sbjct 60592961 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 60592902 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 60592901 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 60592857 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 60588859 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGTGGAGAAT 60588800 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| ||| || ||||| |||||||| || || ||||| Sbjct 60588799 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 60588740 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||| | |||||||| || Sbjct 60588739 GACAGCTCTTTAGCATTTGTGGATCC 60588714 >seq1503 Length=86207423 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || || || Sbjct 27530777 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATC-CT 27530719 Query 114322 C-AGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 114380 | | ||||| |||||| || |||||||||||||| ||||| |||||||| ||||||| | Sbjct 27530718 CTAAAGGTCGATTCTTCTCAGGGATGGAGAACCAGGTCTTCCTACCCATAATCACCAGAT 27530659 Query 114381 TCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 |||| |||||| | ||||| || | |||| | ||| | || | | || || || Sbjct 27530658 TCTGTTTACCTTCTACTGAAGAAGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 27530600 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACAC 114499 | || ||| |||| ||||| || ||||| || ||||||||||||| | | || Sbjct 27530599 CGGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTTTGGGAC 27530546 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 27530545 ACAGCGACGATGCAGTTTAG 27530526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406076652206824