Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1724 269 2e-67 seq1685 262 3e-65 seq1162 118 9e-22 seq1503 102 7e-17 seq1399 98.7 8e-16 >seq1724 Length=455154 Score = 269 bits (298), Expect = 2e-67 Identities = 514/751 (68%), Gaps = 11/751 (1%) Strand=Plus/Plus Query 4386 GCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT 4445 || ||||| || || | || |||| || ||| || || ||||| | ||| ||| Sbjct 265545 GCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCATAGGC 265604 Query 4446 AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATT 4505 | || | || | || || |||||||| || || | | ||| | ||| | | | Sbjct 265605 AAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTGTTTCTCTCACT 265664 Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 | || | |||||||| | || | |||| |||| || || ||||||||||| || Sbjct 265665 CTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCAAAATCACAGTGT 265723 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 ||||| || ||||||||||| ||||| || |||||||| | || ||||| | |||| Sbjct 265724 AAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCATCAGTCCTCGT 265783 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || || ||||| ||||| | ||||| || || |||||||| ||||||||||| || ||| Sbjct 265784 TTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCTACTGCAGCA 265843 Query 4686 AACGCTACTAATCGGG-ACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCA 4744 || ||||| | || ||| | ||| ||||||| |||||| || || || Sbjct 265844 AAGGCTACAACACGTTCACCATAGATAGCCT-CTTTGTCCCCAATCCAGCACAAGGCTCA 265902 Query 4745 GTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTT 4801 | || || ||||| ||||| || || || | || || ||||| | ||| |||| Sbjct 265903 ATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAAATTCCCTTTC 265962 Query 4802 TTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860 || ||| |||| || |||||||| || || || |||||||||||||||||||| | Sbjct 265963 TT----TGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 266018 Query 4861 TTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTAC 4920 |||| || ||||| || || | || || || | |||||||| | |||||| | | Sbjct 266019 TTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTATTTGGC 266078 Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||||| || || || ||||| |||||||| || ||||| |||||||| || ||| || Sbjct 266079 TAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAA 266138 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | | |||||||| || || || ||||| || || |||||| | | || || | Sbjct 266139 GACGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGG 266198 Query 5041 TTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAA 5100 | || || || || ||||| || || || || || ||||| ||||| ||| | Sbjct 266199 ACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATACATCTGCCAGA 266258 Query 5101 TATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||||| | |||| || || | | |||||| Sbjct 266259 TATCATGGTACTCGATGGGGAAGACGACAAA 266289 >seq1685 Length=141252148 Score = 262 bits (290), Expect = 3e-65 Identities = 515/757 (68%), Gaps = 11/757 (1%) Strand=Plus/Minus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || ||| || || ||||| | | Sbjct 47457116 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 47457057 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || || |||||||| || || | | ||||| || Sbjct 47457056 CACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTTC 47456997 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | | | | | || | ||| |||| | ||| | || | |||| || || |||||||| Sbjct 47456996 TCTCACTCTCTCCTCCGATAGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 47456937 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 | || ||||| || ||||||||||| | ||| || |||||||| | || ||||| | Sbjct 47456936 AG--TGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGGCATCAG 47456879 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| || | |||||||| ||||||||||| Sbjct 47456878 TCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCCTTCTAC 47456819 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAA 4738 || || || ||||| | || || | | | ||||||| |||||| || Sbjct 47456818 TGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCCAATCCAGCGCAA 47456759 Query 4739 TGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTT 4795 ||||| | || || ||||| || || || || || | || || || || | ||| Sbjct 47456758 GGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC 47456699 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 |||| || | | |||| || |||||||| || || || ||||||||||||||||| Sbjct 47456698 CCTTTCTTTGA---GATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATG 47456642 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||| ||||| || ||||| || || || || || || | |||||||| | |||||| Sbjct 47456641 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTAT 47456582 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 | | ||||| || || || ||||| |||||||| || || || |||||||| || | Sbjct 47456581 TTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAAC 47456522 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAA-AT 5034 || |||||| |||||||| || || | ||||| || || ||||| | ||| | Sbjct 47456521 CAGAACATGGGATATAAAATATCTCTCCCCGGGCTTCAGGGATTCCCAGT--GCCAATGT 47456464 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 | || | | || || || || ||||| || || || ||||| || || ||||| Sbjct 47456463 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 47456404 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| ||| || | |||| || |||| |||||||| Sbjct 47456403 GCCAGATACCATGGTACTCGATGGGAAAGATGACAAA 47456367 Score = 154 bits (170), Expect = 1e-32 Identities = 377/565 (67%), Gaps = 11/565 (2%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || ||||| | ||||| | ||||| || | Sbjct 130531236 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGG 130531177 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 130531176 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 130531117 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 ||| ||| || |||||| ||| | | || || | | |||||| | Sbjct 130531116 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 130531057 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| || |||| || || ||||| || || || || || | | || || Sbjct 130531056 ATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAACGGCATTG 130530998 Query 4788 AA--TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 || ||| || | ||| | | |||| ||||| | ||| || || || |||| | Sbjct 130530997 AAGATAAATTCCCTTTCTTTGTTA--TCTTTAATAT--GCGTCAATAAGGAGACTATTTA 130530942 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 | ||||||||||| |||||||||||||| || || || || ||||| | |||||| | Sbjct 130530941 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 130530882 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 |||||||| | | |||| ||| || |||||||| | || ||| || |||| |||| Sbjct 130530881 TCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTG 130530822 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 |||| || |||| || ||| |||||||| || || |||||||| || || ||||| Sbjct 130530821 CAAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAGT 130530762 Query 5026 GGGGCAAA--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 | |||| || || | | || || || | | |||| || || | || |||| Sbjct 130530761 --GCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAGACCTCTACTTT 130530704 Query 5084 TTTGTACATAGACCAAATATCAGGA 5108 || ||||| |||||||||| || Sbjct 130530703 CTTATACATTTTCCAAATATCATGA 130530679 >seq1162 Length=100215132 Score = 118 bits (130), Expect = 9e-22 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | || | ||| ||||| || ||| || | || Sbjct 7502178 AGCTCTTGTGAAAACGGACATTCAGATAGCGTTCCTTTCTGGGTGTTATGGAAGAGTGGC 7502237 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 | | | || || ||||| | ||||||||||| || || || || ||||| |||||| Sbjct 7502238 TTCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGA 7502297 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||||||||| |||||| | | || Sbjct 7502298 AGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG 7502356 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | ||||| || ||| | | || || || ||||||||| Sbjct 7502357 --TCAAAAAAGGTGATCGAATTGCACAGCTCATTTGCGAA 7502394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 56829377 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 56829433 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 56829434 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 56829493 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 56829494 ATAAGTCGAC 56829503 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 56811358 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 56811417 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 56811418 ATAAAATCAAAAGGATT 56811434 >seq1503 Length=86207423 Score = 102 bits (112), Expect = 7e-17 Identities = 174/247 (70%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| ||||| |||| || ||||| || || | ||||| | ||| || || || | || Sbjct 48536662 AGCTCTAGTGAAAATGGACATTCAGATAGCTCTTCCTTCTGAGTGTTATAGAAGAGTGGC 48536721 Query 31825 TCC-TAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATT 31883 ||| ||| | ||| ||||| | ||||||||||| || || || || ||||| |||||| Sbjct 48536722 TCCATAGTT-TGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATG 48536780 Query 31884 CAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACA 31940 ||| || ||||||| ||||| ||| ||||||||||||| |||||| | || | Sbjct 48536781 AAGATTACTGAGGAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTAAA 48536839 Query 31941 GTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAA 32000 || ||||| | ||| | | || || || ||||| ||| ||| | || ||| Sbjct 48536840 GTCAGAAAAA--GTGATCGTATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAA 48536897 Query 32001 TAGAAGT 32007 ||||||| Sbjct 48536898 TAGAAGT 48536904 >seq1399 Length=81552678 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 9735776 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 9735717 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 9735716 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 9735657 Query 4692 AC 4693 || Sbjct 9735656 AC 9735655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 9733360 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 9733301 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 9733300 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 9733243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426958601602172