Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1685 383 2e-101 seq1724 379 3e-100 seq1399 120 4e-22 seq1115 105 9e-18 seq1162 102 1e-16 >seq1685 Length=141252148 Score = 383 bits (424), Expect = 2e-101 Identities = 657/945 (70%), Gaps = 29/945 (3%) Strand=Plus/Minus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT---CTTGAGACATAACTCC 47845 |||| |||| |||||| ||||||| | |||| ||| | || ||||| || ||||| Sbjct 47457295 GTTCATTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTGTTGGACTTGACACC--ACTCC 47457238 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| | || || | |||| || || ||||| ||| || ||| || Sbjct 47457237 CATCCTCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAAT 47457183 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| | |||||| |||||||| | || | ||| || |||| || | ||| Sbjct 47457182 ATTCTACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAG 47457123 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || ||||| ||||| || || || || ||| ||||| | |||||||| || || Sbjct 47457122 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 47457063 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || || || | ||||| || || || || ||||| || ||||||| | || Sbjct 47457062 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAAT 47457003 Query 48086 TATCGATGTTACCGTTTCCTC----ACTTGGTGGATACAACAAATGTTTAAACATTAAAC 48141 ||| | | || | ||||| | || ||| ||| || ||||| ||||| || | Sbjct 47457002 TATTTCTCTCACTCTCTCCTCCGATAGTTTGTG--TAC--CAGGTGTTTGAACATCAAGC 47456947 Query 48142 ATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGAC 48201 | ||||||||| || | ||| |||||||| ||||| ||||| || ||||| ||||| | Sbjct 47456946 AAGCAAAATCAG--TGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGC 47456889 Query 48202 CGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATA 48261 | ||||| ||||| ||||| |||||||| ||||| | || ||||| | |||||||| | Sbjct 47456888 CAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGA 47456829 Query 48262 TGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---A 48318 |||||||||| || || || || || | || || || |||| || |||| | Sbjct 47456828 TGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCCAA 47456769 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 |||| || |||||||| ||||||||||| ||||||||||| ||||| || ||||| | Sbjct 47456768 TCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGA 47456709 Query 48379 AGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTT 48438 ||||||| | |||| ||| |||||| | |||||| || || | ||||||||||||| Sbjct 47456708 AGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTT 47456649 Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCT 48498 | || || || ||||| || || || || || || || ||||| | |||||||| |||| Sbjct 47456648 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCT 47456589 Query 48499 GTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAA 48558 | || | |||||| || ||||||| ||||||||||| ||||| || || |||| Sbjct 47456588 GAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTGCAA 47456529 Query 48559 AAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT--C 48616 | || | | ||||| ||||||||| | || || |||| | ||||| | Sbjct 47456528 AGAAAACCAGAACATGGGATATAAAATATCTCTCCCCGGGCTTCAGGGATTCCCAGTGCC 47456469 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 | || || || || | || || || || | ||||| || || ||||| || || || Sbjct 47456468 A---ATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTT 47456412 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 |||||| | ||| ||| || ||| | ||| || || || ||||| Sbjct 47456411 ATACATCTGCCAGATACCATGGTACTCGATGGGAAAGATGACAAA 47456367 Score = 205 bits (226), Expect = 1e-47 Identities = 383/559 (69%), Gaps = 8/559 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| | ||| || | ||| ||||| || || | | ||| | ||||||||||| Sbjct 130531236 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGG 130531177 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| ||||| |||| |||||||| ||||| || ||||| ||||||||||| Sbjct 130531176 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 130531117 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTG 48316 ||| ||| || ||||| || | || | ||||| ||||| | ||| ||| Sbjct 130531116 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAAC-GTCTTTGTTCCC 130531058 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | ||||| | ||||||||||| |||| |||||| ||||| | ||||| Sbjct 130531057 AATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAACGGCATT 130530999 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||| ||| | |||| ||| ||||||||| || | || || | ||||||| || Sbjct 130530998 GAAGATAAATTCCCTTTCTTTGTTATCTTTAA--TATGCGTCAATAAGGAGACTATTTAT 130530941 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || || || ||||| || || || || || || || || || | |||||| || Sbjct 130530940 GTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 130530881 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 ||| || || | |||| |||| |||| || |||| || ||| ||||||| || || Sbjct 130530880 CTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGC 130530821 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC 48616 ||| || || | | ||| ||||||||| ||| | | |||| | ||||| Sbjct 130530820 AAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAGTG 130530761 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 || || || || | || || || | || |||| || || ||||| |||| || Sbjct 130530760 CCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAGACCTCTACTTTCTT 130530701 Query 48677 ATACATATTCCATATATCA 48695 |||||| ||||| |||||| Sbjct 130530700 ATACATTTTCCAAATATCA 130530682 >seq1724 Length=455154 Score = 379 bits (420), Expect = 3e-100 Identities = 650/939 (69%), Gaps = 13/939 (1%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| ||||||| | |||| ||| ||| | || |||| ||||| Sbjct 265357 GTTCATTTAGAAGTCAGCATCTAAGGTAAAAGAATTTTCTGTTGGACTTGACACCACTCC 265416 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || | | |||| || || ||||| ||| || ||| || Sbjct 265417 CATCCTCTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAAT 265471 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| |||||||| |||||||| | || | ||| || |||| || | ||| Sbjct 265472 ATTCTCCATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAG 265531 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 | ||||| |||| || || || || || ||||| | |||||||| || || Sbjct 265532 CCTAAGTCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAAT 265591 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || | || | ||||| || || || || ||||| || ||||||| | || Sbjct 265592 GAGCTTCATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAAT 265651 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 | | | | || | ||||| |||| | || || | ||| ||||| || || || Sbjct 265652 TGTTTCTCTCACTCTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GC 265710 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||||||||| || | ||| |||||||| ||||| | ||| || ||||| ||||| || || Sbjct 265711 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGG 265770 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| ||||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| Sbjct 265771 CATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCC 265830 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322 |||||| || ||||| || || | || || || | || || |||| ||||| Sbjct 265831 TTCTACTGCAGCAAAGGCTACAACACGTTCACCATAGATAGCCTCTTTGTCCCCAATCCA 265890 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 | || ||||| || |||||||| || |||||||| ||||| || ||||||||||| Sbjct 265891 GCACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAG 265950 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 ||| | |||| ||| |||||| | |||||| || || | |||||||||||||| || Sbjct 265951 AAATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 266010 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || ||||| || || || || || | || ||||| | |||||||| ||||| || Sbjct 266011 ATGTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAAC 266070 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 | |||||| || ||||||| ||||||||||| |||||||| || ||||| || Sbjct 266071 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 266130 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 | | | | | ||||||||| | || | || |||| | ||||| | || Sbjct 266131 AACCAGAAGACGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAAT 266190 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || || || | || || || || | ||||| || || |||||||| ||||||||||| Sbjct 266191 GTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATACAT 266250 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| |||||| ||| | ||| ||||| | ||||| Sbjct 266251 CTGCCAGATATCATGGTACTCGATGGGGAAGACGACAAA 266289 >seq1399 Length=81552678 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 9735776 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 9735717 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 9735716 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 9735658 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||| | |||||| || || | ||||||||||||||| || || || | Sbjct 9733368 TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 9733309 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 9733308 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 9733254 >seq1115 Length=110690730 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 66344667 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 66344608 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 66344607 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATTGGGGCAATAAGTAAACTG 66344548 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 66344547 TTTCTTATACCAT 66344535 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| ||||| Sbjct 66324641 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 66324582 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||| || |||| || ||||| || || || || || | ||| | ||||||| Sbjct 66324581 TATGTTTCGATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 66324522 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 66324521 ATATGTTGTGGTCTTTCAGCC 66324501 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| ||||||| || ||||||| || | || Sbjct 66333963 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 66333904 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || || || | || || ||||||| || Sbjct 66333903 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 66333844 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 66333843 TCCAGGTAAATAGC 66333830 >seq1162 Length=100215132 Score = 102 bits (112), Expect = 1e-16 Identities = 242/359 (67%), Gaps = 19/359 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | ||||| || |||| | | ||| ||||| Sbjct 7502475 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCGGTGTCATCCAAGGCTTGAACTTCT 7502418 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || ||| | || || || || |||| |||||| | || Sbjct 7502417 TCTATTTCTGGATAAAAAATCTGTTCGCAAATGAGCTGTGCAATTCGATCACCTTTTTTG 7502358 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 7502357 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 7502298 Query 46054 TCATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| ||| |||| || || || || | | | Sbjct 7502297 TCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGAA 7502238 Query 46111 GCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 || | |||||||||| ||||| | | | ||| |||| || ||||| | ||| Sbjct 7502237 GCCACTCTTCCATAACACCCAGAA----AGGAACGCTATCTGAATGTCCGTTTTCA-CAA 7502183 Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223 |||||||| ||| | || || || || || |||||||| | || || ||||| Sbjct 7502182 -GAGCTTTCTCCATAGGTAGTATTGTGTAATCATAAGCACTGTACAGGTCGTAGCCTGC 7502125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694516980133760