Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq628 179 5e-40 seq565 129 8e-25 >seq628 Length=118206036 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| |||| |||||| ||||| || ||||| || |||||||| || Sbjct 29169638 GTCTGGAACAACTGCTCATCACCCCATTCGGGATGCTCCTGTTTAAGCACATCGCATACT 29169579 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 29169578 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 29169519 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | || | | || || |||| ||||| |||||||| | Sbjct 29169518 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 29169459 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 29169458 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 29169410 Score = 178 bits (196), Expect = 2e-39 Identities = 233/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 8263 CTTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCT 8322 ||||| |||||| ||| ||||| | ||| | || || ||||| ||||| ||||| | Sbjct 29171690 CTTGATGAGCTCTGGATCTGGAACACTGAATGACGCAAAGGGACAGCCCTTCACGTTATT 29171631 Query 8323 ACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAA 8382 |||| ||||||||||| | || | |||| ||| || ||||| ||||| || || Sbjct 29171630 GCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAA 29171571 Query 8383 GGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGA 8442 ||||| ||||||||||| | || || || || || || |||| || ||||| | ||| Sbjct 29171570 AGTGCTTGGCTTCCAGTAGTCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGA 29171511 Query 8443 GAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTC 8502 ||| || || || | || | ||| ||||||| |||||||| | ||||| |||||||| Sbjct 29171510 GAATGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTC 29171451 Query 8503 CACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTC 8562 |||| | | | |||||||||||||| |||| ||| || || || || | || Sbjct 29171450 TACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTC 29171391 Query 8563 GGCAGCGATCTCCTTTTCTCCTG 8585 |||| || ||||||||||||| Sbjct 29171390 TGCAGACATTTCCTTTTCTCCTG 29171368 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 29168476 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 29168417 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 29168416 AAACTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCACGTTTGTGCCCTGGGGATC 29168357 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | |||||| |||||||||| | | ||| || |||| Sbjct 29168356 AGGGATGAACTTTCTTCTTAGAAGAAACTTTTCCACAATTTCATTTGAATCAGGAAGCTG 29168297 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 ||||||||| || ||||| Sbjct 29168296 CTTTTTACCTGAAAAATGAGAA 29168275 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||||||||| || | ||||| || || || | ||| || ||||| || || | Sbjct 29167865 TCACCTTTGACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGGTA 29167806 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||| || ||||| |||||||||||| ||| | ||||| ||||||| | Sbjct 29167805 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACGTTGTAAGTT 29167746 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || ||||||||||||| ||||| |||| Sbjct 29167745 GGTGGACTGTCAATCAAATGTGATCTGGCTGA 29167714 Score = 100 bits (110), Expect = 4e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 29170232 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 29170173 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | ||| ||||||||||||| || ||| | |||| || || | || ||| | Sbjct 29170172 AGCAATATAGAATTGTTGTAGATAAACTGTTGA--TAGTTGTAGTTCTGGTCATGAATTT 29170115 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| || | |||||||||||| | |||||||||| | | |||| Sbjct 29170114 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATAC 29170055 Query 9122 GATTTTGGTACTGGAA 9137 |||||||||||||||| Sbjct 29170054 GATTTTGGTACTGGAA 29170039 >seq565 Length=117381234 Score = 129 bits (142), Expect = 8e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||||| || |||| || ||||| || ||||| |||||||||||| |||| | Sbjct 101538684 TCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 101538625 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 101538624 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 101538565 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || |||||| | | | ||||| ||| | ||||| Sbjct 101538564 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCGGGGTAAAACTCCA 101538505 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || | || | || || || |||||||| |||||| Sbjct 101538504 ACGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 101538449 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || || |||||||| |||| | || |||||| | || || || |||| | ||| Sbjct 101527798 GTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 101527741 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 101527740 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGATGTTGGTGCCTTGGG 101527681 Query 9765 GATCGGGAGTGAAGGTCCTCC 9785 | || || |||| |||||| Sbjct 101527680 GGTCAGGTATGAACTTCCTCC 101527660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716720126575360