Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq25 89.7 4e-13 seq21 89.7 4e-13 seq212 87.8 2e-12 seq158 87.8 2e-12 seq275 84.2 2e-11 seq102 82.4 7e-11 >seq25 Length=21972308 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| |||||||| || ||||| ||||| ||||||||| Sbjct 20948443 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTCATTTTTGCTGGCAAGCAACTGGAA 20948502 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || | || ||||| ||||| ||||| || |||||||| | |||||| Sbjct 20948503 GATGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTA 20948562 Query 29175 CGATTACGAGGAGG 29188 || | || || || Sbjct 20948563 AGACTTCGTGGTGG 20948576 >seq21 Length=25602908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| |||||||| || ||||| ||||| ||||||||| Sbjct 20609766 GATAAAGAAGGAATTCCTCCTGATCAGCAAAGACTCATTTTTGCTGGCAAGCAACTGGAA 20609825 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| || | || ||||| ||||| ||||| || ||||||||| | || ||| Sbjct 20609826 GATGGACGTACTGTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCACCTTGTATTA 20609885 Query 29175 CGATTACGAGGAGG 29188 || | || || || Sbjct 20609886 AGACTTCGTGGTGG 20609899 >seq212 Length=2426081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||| | ||||| | ||||| || ||||| || || | |||||| Sbjct 1901085 AAGATGCAGATTTTCGTAAAAACCCTCACGGGGAAGACCATCACTCTTGATGCTGAACCC 1901144 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 1901145 TCAGATACGATAGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1901204 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| || ||||| ||||| |||||||||||| ||| | || ||| Sbjct 1901205 CAGCAAAGACTCATTTTTGCAGGCAAGCAACTGGAAGATGGACGTACTTT----GACTAC 1901260 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGA 29177 || ||||| ||||| || |||||||| | |||||| || Sbjct 1901261 AACATTCAAAAGGAGTCCACTCTTCATGTTGTGTTAAGA 1901299 >seq158 Length=4245986 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| |||||||| || ||||| ||||| ||||||||| Sbjct 3727717 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTCATTTTTGCTGGCAAGCAACTGGAA 3727776 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || | || ||||| ||||| ||||| || |||||||| | |||||| Sbjct 3727777 GATGGAGATACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTA 3727836 Query 29175 CGA 29177 || Sbjct 3727837 AGA 3727839 >seq275 Length=1128609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||| |||||||||| || ||||| ||||| |||||||||||| | ||| | | || Sbjct 593998 GATGAACAAAGACTCATTTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTTCCTGAC 594057 Query 29136 TACAATATTC-AGAAGGAATCTACTCTTCACATGGTGTTACGA 29177 ||||| |||| ||||||| ||||||||||| | |||||| || Sbjct 594058 TACAACATTCAAGAAGGAGTCTACTCTTCATTTTGTGTTAAGA 594100 >seq102 Length=7754592 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||||| ||||| | | ||| || ||||| || ||| || ||| Sbjct 7635762 AAGATGCAGATGTTCATAAAAACCCTCATGGGGAAGACCATCACTCTCGAGGTTGACCCC 7635821 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || | ||| || || ||||| ||||| | || ||| Sbjct 7635822 TCGGATACAATAGAAAATGTGAAGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7635881 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| | ||||| ||||| |||||||||||| ||| || | || ||| Sbjct 7635882 CAGCAAAGACTCGTTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 7635941 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || |||||||| | |||||| || | || || || Sbjct 7635942 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTAAGACTTCGTGGTGG 7635991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428295317851415