Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq25 100 2e-16 seq46 95.1 9e-15 seq158 89.7 4e-13 seq21 86.0 5e-12 seq102 82.4 6e-11 seq51 82.4 6e-11 seq9 82.4 6e-11 >seq25 Length=21972308 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| | || | ||||| || || || ||||||||||||||||| | | Sbjct 20948576 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 20948517 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||||| ||| ||||| ||| | || |||||||| ||||| || Sbjct 20948516 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGAGGA 20948457 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| |||| | | | || || ||| || Sbjct 20948456 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACCTTTTCTATCGTATCCGAGGGTTCAACC 20948397 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| |||||| | || || || | |||||||||||||| ||||| || Sbjct 20948396 TCAAGAGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTT 20948347 >seq46 Length=13992998 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| ||||| || ||||||||||| | | || || ||| Sbjct 3038118 AGGACCAGGTGGAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 3038059 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | ||||| ||||| Sbjct 3038058 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATCCCTTCTTTATCC 3037999 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| |||||| || | ||||||| | Sbjct 3037998 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 3037939 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| |||||||| || ||||||||||| Sbjct 3037938 TTGCCAGTCAGGGTTTTTACGAAGATTTGCATTTT 3037904 >seq158 Length=4245986 Score = 89.7 bits (98), Expect = 4e-13 Identities = 172/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || | ||||| | || | ||||| || || | Sbjct 3727873 AAGACTTCTTCCTTTTCTTAGCACCACCACAAAGTCTTAACACAAGATGAAGAGTGGACT 3727814 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | | |||||||| ||| ||||| ||| | | Sbjct 3727813 CCTTTTGAATGTTGTAGTCAGACAAAGTATCTCCATCTTCCAGTTGCTTGCCAGCAAAAA 3727754 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | |||||||| ||||| || | ||||||||||| || | ||| || | | Sbjct 3727753 TGAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTTT 3727694 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | | || || ||| || || | |||||| | || || || | |||||||||| Sbjct 3727693 CTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCTGTGAGGGTTTTTACAA 3727634 Query 18316 AAATTTGCATTTT 18328 |||| ||||| || Sbjct 3727633 AAATCTGCATCTT 3727621 >seq21 Length=25602908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | ||| | |||||| || || || |||||| Sbjct 20609914 TTCCTTTTCTTAGCACCACCACGAAGTCTTAATACAAGGTGAAGAGTGGACTCCTTTTGA 20609855 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| | || |||||| Sbjct 20609854 ATGTTGTAGTCAGACACAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGTCTT 20609795 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 || ||||| || | ||||| ||||| Sbjct 20609794 TGCTGATCAGGAGGAATTCCTTCTTTATC 20609766 >seq102 Length=7754592 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | |||||||| ||| | | || || ||||| | || | ||||| || || | Sbjct 7636014 AAGACTTCTTCTTTTTCTTAGCACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACT 7635955 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| ||||| ||| | | Sbjct 7635954 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAA 7635895 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||| ||||| || | ||||||||||| Sbjct 7635894 CGAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7635858 >seq51 Length=12882142 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| ||||| || || |||||||| | | || || |||| Sbjct 9170541 AGGACCAGGTGTAGGGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACCACCATCT 9170482 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || || || ||||| ||| |||| || || || || || || | ||||| ||||| Sbjct 9170481 TCAAACTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATACCTTCTTTATCT 9170422 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | ||||||| |||||| || | ||||||| | Sbjct 9170421 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 9170362 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| |||||| || ||||||||||| Sbjct 9170361 TTGCCAGTCAGGCTTTTTATGAAGATTTGCATTTT 9170327 >seq9 Length=38779656 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || |||||||||| ||| | | || | ||||| | || | ||||| || || | Sbjct 2389029 AAGACTTTTTCTTTTTCTTAGCACCACCACAAAGTCTTAACACAAGATGAAGAGTGGACT 2389088 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || |||||||| | ||| ||||| ||| | | Sbjct 2389089 CCTTTTGAATGTTGTAGTCAGACAAAGTACATCAATCTTCTAGTTGCTTGCCAGCAAAAA 2389148 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | |||||||| ||||| || | |||| |||||| Sbjct 2389149 TGAGTCTTTGCTGATCAGGAGGAATTCCTTACTTATC 2389185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379307970973785