Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 102 7e-17 seq1 102 7e-17 seq158 96.9 3e-15 seq25 96.9 3e-15 seq46 91.5 1e-13 >seq9 Length=38779656 Score = 102 bits (112), Expect = 7e-17 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || ||||| ||||| ||||| || | |||||||| Sbjct 2389280 AAGATGCAGATTTTCGTAAA-ACCCTTACAGGGAAAACCATCACACTCAAGGTTGAACCC 2389222 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || ||| | || ||| ||| |||| | || || || Sbjct 2389221 TCAGATATGATAGAAAATGTGAAAGCCAAGATCCAGGATAAGTAAGGAATTCCTCCTGAT 2389162 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || | ||||| | ||| ||| || || || Sbjct 2389161 CAGCAAAGACTCATTTTTGCTGGCAAGCAACTAGAAGATTG-ATGTACTTTGTCTGACTA 2389103 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 2389102 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTAAGACT 2389061 >seq1 Length=73491278 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || ||||| | ||| || || || ||||| || || || || Sbjct 30997211 ACCTCATCTTTGCTGGTATATTCTACTACTTCTGTGCACAGGTTGCTGCATTTGATGGTT 30997152 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || |||||||||||| ||||| || ||||| ||||| |||||||| || || Sbjct 30997151 CCCAGGTTCTGCTGGTTGCTTTTCCGATTACAAGAATCTTTGTACAGCATGTATGGGGTT 30997092 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 30997091 CCTGTCTCTGTCTGAGACTCAATGATGGC 30997063 >seq158 Length=4245986 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| ||||| || || ||||| || || ||||| |||| |||||||| Sbjct 3727621 AAGATGCAGATTTTTGTAAAAACCCTCACAGGGAAGACCATCACTCTCGAGGTTGAACCC 3727680 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 3727681 TCGGATACAATAGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3727740 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | || || || |||||||| || ||||||| ||| || || || Sbjct 3727741 CAGCAAAGACTCATTTTTGCTGGCAAGCAACTGGAAGATGGAGATACTTTGTCTGACTAC 3727800 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 3727801 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTAAGACT 3727841 >seq25 Length=21972308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| ||||| || || ||||| || || ||||| | || |||||||| Sbjct 20948347 AAGATGCAGATTTTTGTAAAAACCCTCACAGGGAAGACCATCACTCTTGAGGTTGAACCC 20948406 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| ||| || | || ||| |||||||| | || || || Sbjct 20948407 TCGGATACGATAGAAAAGGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 20948466 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | || || || |||||||| || ||||||| ||| || || || Sbjct 20948467 CAGCAAAGACTCATTTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 20948526 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 20948527 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTAAGACT 20948567 >seq46 Length=13992998 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||| |||||||| || ||||| ||||| || |||||| | || || || Sbjct 3037902 TCAAA-ATGCAAATCTTCGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 3037960 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | || || | || ||| || ||||| | || ||| Sbjct 3037961 CCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGGATCCCTCCC 3038020 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| |||| || | ||| | || Sbjct 3038021 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGAC 3038080 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| || || || || ||||| || | |||||||| |||| Sbjct 3038081 TACAACATCCAGAAAGAGTCAACCCTCCACCTGGTCCTGCGCCTGAGGGGTGGTA 3038135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445722976780560