Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq126 264 1e-65 seq118 183 3e-41 seq22 125 7e-24 seq4 111 1e-19 seq1 102 8e-17 >seq126 Length=6050536 Score = 264 bits (292), Expect = 1e-65 Identities = 617/921 (67%), Gaps = 25/921 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | ||||||| | |||| || | || | Sbjct 4678257 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATATTTGCCTACTC-TCTTCTCAA 4678315 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| || || ||||| |||| |||||||||| ||| ||||| | ||| Sbjct 4678316 AGAAGTTAGTCTTTCCGTCCAGTGAAATATCCTCCATAAAGTCAAACGGATTTTCTACTC 4678375 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | | | || || || || || || | || Sbjct 4678376 TGAAAACCTTGTGGAAACCCAGTTCCAGCATAAGTGTGTCCGCCACCAACTCAATGTCCT 4678435 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | |||||| | | ||| || || || | | | || | || | || | |||| Sbjct 4678436 GCTTCATTAATGTGTAGTCCATCCCAATGAGCTTCCCAGGCAAGGCCTCAGTGAGGAACT 4678495 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| | ||| |||| ||| | ||||| ||| | || || ||| | Sbjct 4678496 CCTGTCCTAGCCTAACAGCACTGGTCATTATTTCTTTTACTCTCTGCTCCGACGGTTTGT 4678555 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 || | ||||| | ||| | || ||||| ||||| |||||||| || ||||| || | Sbjct 4678556 GTCCCAGGTGTTTGAGCATCAGTCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAA 4678615 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | |||||||| |||||||| || ||||||| ||||||||| || | ||| ||||| | Sbjct 4678616 TAAGTTCATTGGAAAATGTGGG-CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTG 4678674 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| ||||||||||| || ||||| ||||| |||||||| ||||| || | ||||| Sbjct 4678675 AGGCAAAAGAACCAGAAAAAAAGATTCCTTCCACTGCTGCAAAGGCTACAACACGTTCTC 4678734 Query 11787 CATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843 |||| || ||| ||| ||||| ||||| | | || ||||| || || | Sbjct 4678735 CATAGGTAGCCTCTTTGTCCCCAATCCAACGCAAGGCCCCAGCTGCCTTCTTCTTGACAC 4678794 Query 11844 ATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATA 11901 | |||| |||| ||||| || | | |||| | ||||| |||| | | || Sbjct 4678795 AAAGCATTATTTCAATAGCATTGAAGAGAAATTC--CCTTTCTTGGGAATCTTTAATGTA 4678852 Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTT-GAAAT- 11959 || || || | | |||||||||||| |||||||| |||||||| || |||| | ||| Sbjct 4678853 AGTGTCAATAAGGAGACTATACATTTCAGAATGAATGTTTTCCATGGCAATTTGGCAATT 4678912 Query 11960 -------CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGC 12012 | ||||||||| || ||||||| | ||| || || ||||| |||| | Sbjct 4678913 TCTATGGCTATAGAAACAACGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGTTCCAC 4678972 Query 12013 TAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAA 12072 || || |||||||| || |||||||| | ||| ||||| || || | |||| ||| || Sbjct 4678973 CAAGTTTTCATTTACTATGCCATCACTTGCTGCGAAAAAAGCCAGAACATGTGATATGAA 4679032 Query 12073 GTATTTTTCGTCTTTAG---TTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTAC 12129 |||| | ||||| | | || | |||| | | | || || || | ||| || Sbjct 4679033 GTATCT---CTCTTTGGGCTTCAAGGTTGCCCAGTGCTGAATGTCCTTAGAAAGATCCAC 4679089 Query 12130 TTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATA 12189 || ||| | ||||| ||| || | | || |||||||||| ||| || ||||| || Sbjct 4679090 CTCCTCAGCCGTCCACAAAGACACCTCCGCTTTCTTATACATTTGCCAAATGTCATGGTA 4679149 Query 12190 CTTAATAGGGAAAATAACGAA 12210 | ||||| || || || || Sbjct 4679150 TTCGATAGGAAAGATGACAAA 4679170 >seq118 Length=6727830 Score = 183 bits (202), Expect = 3e-41 Identities = 545/836 (65%), Gaps = 36/836 (4%) Strand=Plus/Plus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || || ||||| || || |||| | || |||| |||||||| ||| ||||| | | Sbjct 3435622 TCAAAGAAATTCGTTTTTCCTTGCAAAGAAATATTTTCCATAAAATCAAAGGGATTTTCT 3435681 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 | | ||| || ||| | || | ||| | |||||| | || || || || || Sbjct 3435682 GCCTGGAAAACCTTTGAGAATCCAAGTTCTACAAGTAATCTGTTAGCCACAAACTCAGTA 3435741 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 ||||| | ||| ||| ||||||||| || | || | || || | ||| |||| ||| Sbjct 3435742 TACTGTGTCATCAAAATACAATTCATTCCAACGAGGACAACTGGTAAAGCTTCTGTTAAA 3435801 Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGT 11602 ||||||| || || || || || ||||| || ||| | | | || | || || Sbjct 3435802 AACTCCTGCTCAATTTTGACAGCCTCAATAATGATCTCCCTGACTCTCTCTTCTGAAGGC 3435861 Query 11603 GGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTA 11662 || || || | | ||| || | | ||||| ||||| || | |||||| ||||| Sbjct 3435862 TTATTTACGAAGTATCAAAATATCAGGTAAGCAAAGTCACAGTGCAGACCTTCATCTCTG 3435921 Query 11663 CTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAAT 11722 || || |||||||| ||||| || | ||| | ||| | ||| || |||| | | ||| Sbjct 3435922 CTGATAAGTTCATTGGAAAAAGTGAGTCCAGACATAAGAACTCTCTTCTTTAGCTAGAAT 3435981 Query 11723 ATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTT 11782 ||||||||||| || || || ||||| |||| || ||||| ||||| || || |||||| Sbjct 3435982 ATAGCAGCAAAAGATCCTGAGAAGAAAATTCTTTCTACAGCAGCAAAGGCCACCACTCTT 3436041 Query 11783 TCTCC----ATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838 || || || | || | || | ||||||| || |||||| ||||| || | Sbjct 3436042 TCCCCCAAAGTAGATTTTATATCT-GCTATCCATCACAAGGTCCAATCTGCTTTTTTCTG 3436100 Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCAT--TTTTTCTATATTATCTCTT 11896 || ||| ||||||||| || | ||||||||| || |||||| | ||| Sbjct 3436101 AACACATGGCATTGTTTCAATCACATTAAATAAA-AAATCCCTTTTCT---TGGGATCTG 3436156 Query 11897 ACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956 | || || ||| ||| ||||| ||||| ||||| |||| ||| || || ||||| Sbjct 3436157 ATGTAAGTGTCTGTTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAGAATTTG- 3436215 Query 11957 AATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAA 12016 ||| |||||| | ||| || ||| | | | | | Sbjct 3436216 -------TGAA--------CCTCTGGAACCTGCACCTCCTGA-------CTGACACCACG 3436253 Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 || ||||||| ||| |||||||| | ||||||||| |||| || || | | ||| Sbjct 3436254 TTTTCATTTATAATTCCATCACTGGCTGCAAAAAAGGCTAAAATGTGAGAGACCCAATAT 3436313 Query 12077 TTTTCGTCTTTAGTTAA-TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTC 12135 || || || | | |||| || | ||| | | | |||||||||||| || || ||||| Sbjct 3436314 TTCTCATC-TGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTGATAAGTCAACCTCTTC 3436372 Query 12136 AACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACT 12191 | ||||| || ||| | ||||| || ||||||| ||||| | |||| Sbjct 3436373 TGCTGTCCAGAAGGATGCTTGTTCCTGTTTGTATGTTTTCCAAGTATCAGGGTACT 3436428 >seq22 Length=23169006 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| ||||||||| || Sbjct 2785904 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 2785845 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 2785844 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGGCT 2785785 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 2785784 ACAACACGTTCTCC 2785771 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976 |||||||||||| |||||||| |||||||| || ||||| || ||||||||||| || || Sbjct 2782804 ACTATACATTTCAGAATGAATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGC 2782745 Query 11977 CTCTGAACACTGTACATC 11994 ||||| | ||| || || Sbjct 2782744 CTCTGTAATCTGAACTTC 2782727 >seq4 Length=47749213 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | || ||||| | |||| || | Sbjct 24674284 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 24674225 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 24674224 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 24674165 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 24674164 CCACCACTCTTTCCCC 24674149 >seq1 Length=73491278 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||||| ||||| || ||||| ||||| ||||||||| Sbjct 31005464 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 31005405 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | | || |||| || || || ||||||||||| || || || | Sbjct 31005404 GATTCATTATTCCCCAGGATCTGAGCGGTTGAAGCTGTAGGCATTGGGGCAATAAGTAAA 31005345 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 31005344 CTGTTTCTTATACCAT 31005329 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| |||||||| | || |||| | | | |||| || Sbjct 31008377 TCCAGCCGTAGAAGTGCATACTAGTCAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 31008318 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| ||||| |||||||| |||||||||||| | | | || Sbjct 31008317 TCAAAGACTGGCTTTGATCAATAAAAGCACCTCTCTCGGCTGCCATTGTGAGGACAGTTT 31008258 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATA 37010 | ||||| || ||||| || |||||||| Sbjct 31008257 TCTGAGAAATTTCCCATACAGTTTTATA 31008230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468479159827920