Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq126 264 1e-65 seq118 203 3e-47 seq22 129 6e-25 seq36 95.1 1e-14 seq10 84.2 2e-11 >seq126 Length=6050536 Score = 264 bits (292), Expect = 1e-65 Identities = 632/946 (67%), Gaps = 20/946 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 4678231 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 4678289 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||| | ||||| || |||||||||||||| || || |||||||| |||| || Sbjct 4678290 CTGATATTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCGTCCAGTGAAATATCCTC 4678349 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||| |||||| | | || || || | |||| ||||| | | | Sbjct 4678350 CATAAAGTCAAACGGATTTTCTACTCTGAAAACCTTGTGGAAACCCAGTTCCAGCATAAG 4678409 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | | || || | |||||||| | || |||||| | | ||| || || || || Sbjct 4678410 TGTGTCCGCCACCAACTCAATGTCCTGCTTCATTAATGTGTAGTCCATCCCAATGAGCTT 4678469 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC-CTCTTTTATAATAA 13821 |||| | | || | || || | | ||| ||||| || | || | Sbjct 4678470 CCCAGGCAAGGCCTCAGTGAGGAACTCCTGTCCTAGCCTAACAGCACTGGTCATTATTTC 4678529 Query 13822 TTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13881 || || | ||| | || || | | || ||||| | || | || ||||| | Sbjct 4678530 TTTTACTC-TCTGCTCCGACGGTTTGTGTCCCAGGTGTTTGAGCATCAGTCAGGCAAAGT 4678588 Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941 |||| || | ||||||||||| ||||||||||| || |||||||| || ||||||| Sbjct 4678589 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGGG-CCAGGCATCA 4678647 Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001 ||||||||| || | ||| ||||||| ||||| || || ||||| || ||||| || | Sbjct 4678648 GTCCTCGTTTCTTGAGCCAGAATATTGAGGCAAAAGAACCAGAAAAAAAGATTCCTTCCA 4678707 Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061 |||| ||||| |||| | ||||||||| | | || | ||||| | ||||| Sbjct 4678708 CTGCTGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCA 4678767 Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121 |||| | | || || || | | || |||| ||||||||||||| || | | ||| Sbjct 4678768 AGGCCCCAGCTGCCTTCTTCTTGACACAAAGCATTATTTCAATAGCATTGAAGAGAAATT 4678827 Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 || | |||| | | | |||||| || |||||||| | |||||||||||||| || | Sbjct 4678828 CCCTTTCTTGGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGAA 4678887 Query 14182 TGTTTTCCATAGCTATCTGAAAA---------CCATAAAAGCATCTAGCTTCCGACCATT 14232 |||||||||| || || || || | ||| || || | || || | | Sbjct 4678888 TGTTTTCCATGGCAATTTGGCAATTTCTATGGCTATAGAAACAACGGGCCTCTGTAATCT 4678947 Query 14233 GTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292 | ||||| | ||||| ||| |||| |||||||| ||||| |||||||| ||||| | Sbjct 4678948 GAACTTCTTGGCTAAATCGTTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCGA 4679007 Query 14293 AAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT- 14349 |||| ||| || |||| | || |||||| ||||| || | || ||| | Sbjct 4679008 AAAAAGCCAGAACATGTGAT--ATGAAGTATCTCTCTTTGGGCTTCAAGGTTGCCCAGTG 4679065 Query 14350 CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14409 | || | |||||||||||||| || || ||| | ||||| ||| | | ||||| | Sbjct 4679066 CTGA-ATGTCCTTAGAAAGATCCACCTCCTCAGCCGTCCACAAAGACACCTCCGCTTTCT 4679124 Query 14410 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 |||||||| ||| || || | ||| |||||||| | ||||| Sbjct 4679125 TATACATTTGCCAAATGTCATGGTATTCGATAGGAAAGATGACAAA 4679170 >seq118 Length=6727830 Score = 203 bits (224), Expect = 3e-47 Identities = 401/588 (68%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 13595 AACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAA 13654 || || ||| |||||||| || ||||| |||| || || |||||||||||||||||||| Sbjct 3435612 AATTCATTTCTCAAAGAAATTCGTTTTTCCTTGCAAAGAAATATTTTCCATAAAATCAAA 3435671 Query 13655 TGGATTTATTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTAATCTATCAGCAA 13713 |||||| || | || || || | | || || ||||||| |||||||| | ||| | Sbjct 3435672 GGGATTTTCTGCCTGGAAAACCTT-TGAGAATCCAAGTTCTACAAGTAATCTGTTAGCCA 3435730 Query 13714 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13773 ||||||| |||| || | ||| ||| ||||||||| || | || || || | Sbjct 3435731 CAAACTCAGTATACTGTGTCATCAAAATACAATTCATTCCAACGAGGACAACTGGTAAAG 3435790 Query 13774 TATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833 | |||||||| || | || || |||||||| | || || | | ||| Sbjct 3435791 CTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCCTCAATAATGATCTCCCTGACTCTCT 3435850 Query 13834 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAAC--ACGCAAAATCACAATGAAG 13891 | | ||||| ||||| || || | ||||| | | ||||| ||||| || || Sbjct 3435851 CTTCTGAAGGCT--TATTTACGAAGTATCAAAATATCAGGTAAGCAAAGTCACAGTGCAG 3435908 Query 13892 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 || |||||||| || |||||||| || ||||| || | ||| | ||| | ||| || Sbjct 3435909 ACCTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCAGACATAAGAACTCTCTT 3435968 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 |||| | | ||||| |||||||| || || || ||||| |||| || || |||||||| Sbjct 3435969 CTTTAGCTAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCTTTCTACAGCAGCAAA 3436028 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 || | | || ||| || || | | |||| | | | ||||||| | ||| || Sbjct 3436029 GGCCACCACTCTTTCCCCCAAAGTAGATTTTATATCTGCTATCCATCACAAGGTCCAATC 3436088 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT 14131 | |||||| | || | | |||||||||||| ||||||||||| | ||| | | || Sbjct 3436089 TGCTTTTTTCTGAACACATGGCATTGTTTCAATCACATTAAATAAAAAATCCCTTTTCTT 3436148 Query 14132 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 | | || ||||| || || | || || || ||||| || ||||| Sbjct 3436149 GGGATCTG--ATGTAAGTGTCTGTTAGCAAACTGTACATCTCTGAGTG 3436194 >seq22 Length=23169006 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 2785906 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2785847 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 2785846 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGG 2785787 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 2785786 CTACAACACGTTCTCC 2785771 Score = 104 bits (114), Expect = 2e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 2788375 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 2788317 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 2788316 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 2788257 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 2788256 CATAAAGTCAAATGGATTT 2788238 >seq36 Length=16585812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || | ||| | Sbjct 11366890 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCTCATCCT 11366948 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||||| || |||||||||||||| || |||||||| || ||||| || Sbjct 11366949 CTGATATTCCCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGGGAAATATTCTC 11367008 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 11367009 CATAAAGTCAAATGGATTT 11367027 >seq10 Length=38611459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 118946 GAAGGTAATCATGGATTACATATACATGAGTTTGGTGATGAAACTAATGGTTTTTTGAGT 119005 |||||| |||| ||||| ||| | ||| ||||||| ||||| || | || | ||| ||| Sbjct 19909084 GAAGGTTATCACGGATTCCATGTCCATCAGTTTGGAGATGATACACAAGGCTGTTTCAGT 19909143 Query 119006 ATGGGGAATCATTACAATCCTGAAAATAAAAAACATGGTAGCCCTTTTAATAATGAGAGG 119065 || ||| | |||||| || | |||||||||||| | || || | || ||| Sbjct 19909144 GCAGGTCCTCACTTTAATCCTCAATACAAAAAACATGGTGGACCAAAGGATGAAGATAGG 19909203 Query 119066 CATATTGGAGATCTGGGAAAT 119086 ||| ||||||||||||| ||| Sbjct 19909204 CATGTTGGAGATCTGGGCAAT 19909224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479681268496200