Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq126 244 1e-59 seq118 185 8e-42 seq22 123 2e-23 seq10 84.2 2e-11 >seq126 Length=6050536 Score = 244 bits (270), Expect = 1e-59 Identities = 628/947 (66%), Gaps = 22/947 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 4678231 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 4678289 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||||| | ||||| || ||||| |||||||| || || |||||||| |||| || Sbjct 4678290 CTGATATTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCGTCCAGTGAAATATCCTC 4678349 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || || |||||| | | || || || | |||| ||||| | | | Sbjct 4678350 CATAAAGTCAAACGGATTTTCTACTCTGAAAACCTTGTGGAAACCCAGTTCCAGCATAAG 4678409 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 | | || || | |||||||| | || |||||| | | ||| || || || || Sbjct 4678410 TGTGTCCGCCACCAACTCAATGTCCTGCTTCATTAATGTGTAGTCCATCCCAATGAGCTT 4678469 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGC-CTCGTTTATAATAA 13609 |||| | | ||| | || || | | ||| ||||| || || || | Sbjct 4678470 CCCAGGCAAGGCCTCAGTGAGGAACTCCTGTCCTAGCCTAACAGCACTGGTCATTATTTC 4678529 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 | ||| | | | | || || | | || ||||| | || | || ||||| | Sbjct 4678530 TTTTACTC-TCTGCTCCGACGGTTTGTGTCCCAGGTGTTTGAGCATCAGTCAGGCAAAGT 4678588 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 |||| || | ||||||||||| ||||||||||| || |||||||| || ||||||| Sbjct 4678589 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGGG-CCAGGCATCA 4678647 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||||||| || | ||| ||||||| || || || || ||||| || ||||| || | Sbjct 4678648 GTCCTCGTTTCTTGAGCCAGAATATTGAGGCAAAAGAACCAGAAAAAAAGATTCCTTCCA 4678707 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 |||| ||||| |||| | ||||||||| | | || | ||||| ||||| Sbjct 4678708 CTGCTGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCA 4678767 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 |||| | | || || || | | || |||| |||| || |||||||| | | || Sbjct 4678768 AGGCCCCAGCTGCCTTCTTCTTGACACAAAGCATTATTTCAATAGCATTGAAGAGAAATT 4678827 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || | |||| | | | |||||| || |||||||| | |||||||||||||| || | Sbjct 4678828 CCCTTTCTTGGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGAA 4678887 Query 13970 TGTTTTCTATAGCTATCTGAAAA---------CCATAAAAACATCTAGCTTCTGACCATT 14020 ||||||| || || || || || | ||| ||||| | || |||| | Sbjct 4678888 TGTTTTCCATGGCAATTTGGCAATTTCTATGGCTATAGAAACAACGGGCCTCTGTAATCT 4678947 Query 14021 GTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAA 14080 | || || | ||||| ||| ||||||||||||| || || |||||||| ||||| | Sbjct 4678948 GAACTTCTTGGCTAAATCGTTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCGA 4679007 Query 14081 AAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14138 |||| ||| || |||| | || |||||| ||||| || | || ||| | Sbjct 4679008 AAAAAGCCAGAACATGTGAT--ATGAAGTATCTCTCTTTGGGCTTCAAGGTTGCCCAGT- 4679064 Query 14139 GGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 ||| || |||||||||||||| || || ||| | ||||| ||| | | ||||| Sbjct 4679065 -GCTGAATGTCCTTAGAAAGATCCACCTCCTCAGCCGTCCACAAAGACACCTCCGCTTTC 4679123 Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||||||||| ||| || || | ||| |||||||| | ||||| Sbjct 4679124 TTATACATTTGCCAAATGTCATGGTATTCGATAGGAAAGATGACAAA 4679170 >seq118 Length=6727830 Score = 185 bits (204), Expect = 8e-42 Identities = 477/720 (66%), Gaps = 39/720 (5%) Strand=Plus/Plus Query 13383 AACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAA 13442 || || ||| ||||| || || ||||| |||| || || ||||||||||||||||| || Sbjct 3435612 AATTCATTTCTCAAAGAAATTCGTTTTTCCTTGCAAAGAAATATTTTCCATAAAATCAAA 3435671 Query 13443 TGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAATAATCTATCAGCAA 13501 |||||| || | || || || | | || || ||||||| | |||||| | ||| | Sbjct 3435672 GGGATTTTCTGCCTGGAAAACCTT-TGAGAATCCAAGTTCTACAAGTAATCTGTTAGCCA 3435730 Query 13502 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13561 ||||||| |||| || | ||| ||| ||||||||| || | || || || | Sbjct 3435731 CAAACTCAGTATACTGTGTCATCAAAATACAATTCATTCCAACGAGGACAACTGGTAAAG 3435790 Query 13562 TATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT---TAATAA 13618 | |||||||| || | || || |||||||| ||||| |||| | | Sbjct 3435791 CTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCCTC---AATAATGATCTCCCTGACTC 3435847 Query 13619 TGTCATTAGAAGGAGGATATTTTAGATGTTT--AAAAATTAAACACGCAAAATCACAATG 13676 | || | |||| | ||||| || || | ||| || | | ||||| ||||| || Sbjct 3435848 TCTCTTCTGAAG--GCTTATTTACGAAGTATCAAAATATCAGGTAAGCAAAGTCACAGTG 3435905 Query 13677 AAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCG 13736 || || |||||||| || |||||||| || ||||| || | ||| | ||| | ||| Sbjct 3435906 CAGACCTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCAGACATAAGAACTCT 3435965 Query 13737 tttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGC 13796 || |||| | | ||||| ||||| || ||||| || ||||| |||| || || ||||| Sbjct 3435966 CTTCTTTAGCTAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCTTTCTACAGCAGC 3436025 Query 13797 AAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCA 13856 ||| || | | || ||| || || | | |||| | | || ||||||| | ||| Sbjct 3436026 AAAGGCCACCACTCTTTCCCCCAAAGTAGATTTTATATCTGCTATCCATCACAAGGTCCA 3436085 Query 13857 TTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTC 13916 || | |||||| | || | | ||||||||| || |||| |||||| ||| | | Sbjct 3436086 ATCTGCTTTTTTCTGAACACATGGCATTGTTTCAATCACATTAAATAAAAAATCCCTTTT 3436145 Query 13917 TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 13976 || | | || ||||| || || | || || || ||||| || ||||| | || || Sbjct 3436146 CTTGGGATCTG--ATGTAAGTGTCTGTTAGCAAACTGTACATCTCTGAGTGAACATTCTC 3436203 Query 13977 TATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAA 14035 || || || |||| ||| | ||| || |||||| || | | Sbjct 3436204 GATGAGAATTTGTGAACC---------TCTGG-----AACC--TGCACCTCCTGACTGAC 3436247 Query 14036 ATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGT 14095 | ||| ||||||||| | ||| |||||||| ||||||||||| || || |||| Sbjct 3436248 A--------CCACGTTTTCATTTATAATTCCATCACTGGCTGCAAAAAAGGCTAAAATGT 3436299 >seq22 Length=23169006 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 2785906 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2785847 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| ||||| || ||||| ||||| | Sbjct 2785846 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGG 2785787 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 2785786 CTACAACACGTTCTCC 2785771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 2788375 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 2788317 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||| | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 2788316 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 2788257 Query 13431 CATAAAATCGAATGGATTT 13449 |||||| || ||||||||| Sbjct 2788256 CATAAAGTCAAATGGATTT 2788238 >seq10 Length=38611459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 118711 GAAGGTAATCATGGATTACATGTACACGAGTTCGGTGATGAAACTAATGGGTTTTTGAGT 118770 |||||| |||| ||||| ||||| || |||| || ||||| || | || | ||| ||| Sbjct 19909084 GAAGGTTATCACGGATTCCATGTCCATCAGTTTGGAGATGATACACAAGGCTGTTTCAGT 19909143 Query 118771 ATGGGAAATCATTATAATCCTGAAAATAAAAAACATGGTAGCCCTTTTAATAATGAGAGG 118830 || ||| | ||||||| || | |||||||||||| | || || | || ||| Sbjct 19909144 GCAGGTCCTCACTTTAATCCTCAATACAAAAAACATGGTGGACCAAAGGATGAAGATAGG 19909203 Query 118831 CATATTGGAGATCTGGGAAAT 118851 ||| ||||||||||||| ||| Sbjct 19909204 CATGTTGGAGATCTGGGCAAT 19909224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478542179468520