Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq25 91.5 1e-13 seq102 89.7 4e-13 seq158 87.8 1e-12 >seq25 Length=21972308 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||||||||| | ||| | |||| ||||||||| | ||||| || ||| Sbjct 20948576 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 20948517 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||| || | || |||| ||| ||||| |||||||| | || || ||||| | || Sbjct 20948516 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGAGGA 20948457 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || | | | || || | || || Sbjct 20948456 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACCTTTTCTATCGTATCCGAGGGTTCAACC 20948397 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || || ||||| |||||||| ||||| || Sbjct 20948396 TCAAGAGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTT 20948347 >seq102 Length=7754592 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||||||||| | ||| | |||| ||||||||| | ||||| || ||| Sbjct 7635991 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 7635932 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || |||| ||| ||||| ||||||| | || || ||||| | || Sbjct 7635931 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAACGAGTCTTTGCTGATCAGGAGGA 7635872 Query 43003 ACACCTTCTTTTTC 43016 | ||||| || || Sbjct 7635871 ATTCCTTCCTTATC 7635858 >seq158 Length=4245986 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||| ||||||||||| | ||| | |||| ||||||||| | ||||| || ||| Sbjct 3727850 CCACCACAAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 3727791 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||| | | || |||| ||| ||||| |||||||| | || || ||||| | || Sbjct 3727790 AAAGTATCTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGAGGA 3727731 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || | | | ||| || | || || Sbjct 3727730 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCTATTGTATCCGAGGGTTCAACC 3727671 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || | || || || || || || || ||||| |||||||| ||||| ||| Sbjct 3727670 TCGAGAGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTTC 3727620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381333378587994