Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq158 107 1e-18 seq25 98.7 7e-16 seq212 89.7 4e-13 >seq158 Length=4245986 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | |||||| || | |||||| ||||| || ||||| |||||||| || Sbjct 3727850 CCACCACAAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 3727791 Query 15197 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | |||| | ||||| | ||| |||||||| | || | | ||| || || || Sbjct 3727790 AAAGTATCTC-CATCTTCCAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGAGG 3727732 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || || || ||| ||| ||| ||||||| ||||| ||| || Sbjct 3727731 AATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCTATTGTATCCGAGGGTTCAAC 3727672 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || ||||| || |||||||||||||| ||||| || Sbjct 3727671 CTCGAGAGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTT 3727621 >seq25 Length=21972308 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | |||||| || | |||||| ||||| || ||||| |||||||| || Sbjct 20948576 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 20948517 Query 15197 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | || | ||||| | ||| |||||||| | || | | ||| || || || Sbjct 20948516 AAAGTATGTC-CATCTTCCAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGAGG 20948458 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || || || ||| ||| || ||||||| ||||| ||| || Sbjct 20948457 AATTCCTTCCTTATCCTGGATCTTGGCCTTCACCTTTTCTATCGTATCCGAGGGTTCAAC 20948398 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || ||||| || |||||||||||||| ||||| || Sbjct 20948397 CTCAAGAGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTT 20948347 >seq212 Length=2426081 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | |||||| || | |||||| ||||| || ||||| |||||||| || Sbjct 1901310 CCACCGCAAAGTCTTAACACAACATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC---- 1901255 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| ||||| || | || | | ||| || || ||| Sbjct 1901254 AAAGTACGTCCATCTTCCAGTTGCTTGCCTGCAAAAATGAGTCTTTGCTGATCAGGAGGA 1901195 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||| ||| ||||||| ||||| ||| || Sbjct 1901194 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCTATCGTATCTGAGGGTTCAGCA 1901135 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || || || |||||||| ||||| ||||| || Sbjct 1901134 TCAAGAGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCATCTT 1901085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362144801238213