Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq126 259 4e-64 seq118 214 2e-50 seq4 102 7e-17 seq22 89.7 4e-13 >seq126 Length=6050536 Score = 259 bits (286), Expect = 4e-64 Identities = 583/869 (67%), Gaps = 24/869 (3%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||||| || ||||| || ||||| ||||| || |||| Sbjct 4678271 TTGACATCACTCCCATCCTCTGATATTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 4678330 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 | || | ||||||| |||||||| || || ||||||| || | || || | Sbjct 4678331 CGTCCAGTGAAATATCCTCCATAAAGTCAAACGGATTTTCTACTCTGAAAACC---TTGT 4678387 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 | |||| | ||| || | | | |||| || || ||||| |||| ||| |||||||| Sbjct 4678388 GGAAACCC-AGTTCCAGCATAAGTGTGTCCGCCACCAACTCAATGTCCTGCTTCATTAAT 4678446 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 ||| ||| || || | || |||||| || || || | || | | | ||| Sbjct 4678447 GTGTAGTCCATCCCAATGAGCTTCCCAGGCAAGGCCTCAGTGAGGAACTCCTGTCCTAGC 4678506 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 ||| || | | | ||| ||| ||| | | ||| | || | | || || Sbjct 4678507 CTAACAGCACTGGTCATTATTTCTTTTACTCTCTGCTCCGACGGTTTGTGTCCCAGGTGT 4678566 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || | ||||| || ||||| |||||||| || || |||||||| || || || || || Sbjct 4678567 TTGAGCATCAGTCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 4678626 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 |||||||| | || ||||| || |||||||| || | ||| ||||| | ||||| ||| Sbjct 4678627 GAAAATGTGGG-CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGAGGCAAAAGAA 4678685 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACT 13317 || |||||||| |||||||| ||||||||||| |||| |||| | ||| ||||| ||| Sbjct 4678686 CCAGAAAAAAAGATTCCTTCCACTGCTGCAAAGGCTA-CAACACGTTCTCCATAGGTAGC 4678744 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATT 13377 | ||| | | ||||| ||||| ||| || | || || || ||| | Sbjct 4678745 CTCTTTGTCCCCAATCCAACGCAAGGCCCCAGCTGCCTTCTTCTTGACACAAAGCATTAT 4678804 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||| || || || || | | | | |||| | ||| ||| ||||| || || | Sbjct 4678805 TTCAATAGCATTGAAGAGAAATTCCCTTTCTTGGGAATCTTTAATGTAAGTGTCAATAAG 4678864 Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA---------CCATA 13488 | ||||||||||| |||||||| |||||||| || |||||| || | ||| Sbjct 4678865 GAGACTATACATTTCAGAATGAATGTTTTCCATGGCAATTTGGCAATTTCTATGGCTATA 4678924 Query 13489 AAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTT 13548 ||||| | ||||||| | ||||||||| | ||||| ||| | |||||||| || Sbjct 4678925 GAAACAACGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGTTCCACCAAGTTTTCATT 4678984 Query 13549 AACTATCCCGTCACTAGCAGCaaaaaaaGCAAG--TATGTGCTTAATAAAttttttttCG 13606 ||||| || ||||| || || |||||||| || ||||| | || || | | | || Sbjct 4678985 TACTATGCCATCACTTGCTGCGAAAAAAGCCAGAACATGTGAT--ATGAAGTATCTCTCT 4679042 Query 13607 TTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTC 13666 || ||| || ||| | ||| || || || | ||| ||||||||| | ||| Sbjct 4679043 TTGGGCTTCAAGGTTGCCCAGTGCTGAATGTCCTTAGAAAGATCCACCTCCTCAGCCGTC 4679102 Query 13667 CAAAAAGAAGCAACAGCCTTCTTATACAT 13695 || ||||| | | || ||||||||||| Sbjct 4679103 CACAAAGACACCTCCGCTTTCTTATACAT 4679131 >seq118 Length=6727830 Score = 214 bits (236), Expect = 2e-50 Identities = 414/602 (69%), Gaps = 12/602 (2%) Strand=Plus/Plus Query 12874 AACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAA 12933 || || ||| ||||| || || |||||||||| || |||||||||||||||||||| || Sbjct 3435612 AATTCATTTCTCAAAGAAATTCGTTTTTCCTTGCAAAGAAATATTTTCCATAAAATCAAA 3435671 Query 12934 AGGATTTTTCGAACAATAGTATTTTTTACACCCTAA-TTCTAGTAACAATCTGTCAGCAA 12992 ||||||| | | | | ||| | | | || ||||| | ||||||| ||| | Sbjct 3435672 GGGATTTTCTGC-CTGGAAAACCTTTGAGAATCCAAGTTCTACAAGTAATCTGTTAGCCA 3435730 Query 12993 CAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAG 13052 ||||||| | |||||| |||| ||| ||| |||||||| | | || || | || Sbjct 3435731 CAAACTCAGTATACTGTGTCATCAAAATACAATTCATTCCAACGAGGACAACTGGTAAAG 3435790 Query 13053 CTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGT 13112 ||||||||||||| | | || || | || || || |||| || || || | | Sbjct 3435791 CTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCCTCAATAATGATCTCCCTGACTC--- 3435847 Query 13113 TCTCTAATGGAGGATTTGATA-GATGCTT--AAACATCATACATGCAAAATCACAGTGCA 13169 ||||| || ||| || || || | | ||| |||| | ||||| |||||||||| Sbjct 3435848 TCTCTTCTGAAGGCTTATTTACGAAGTATCAAAATATCAGGTAAGCAAAGTCACAGTGCA 3435907 Query 13170 ATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTT 13229 ||||||||||| || || || || || ||||| || || || | |||||| ||| | Sbjct 3435908 GACCTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCAGACATAAGAACTCTCT 3435967 Query 13230 TTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAA 13289 | || | | | |||||||||||||| || || || || || |||| ||| || || |||| Sbjct 3435968 TCTTTAGCTAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCTTTCTACAGCAGCAA 3436027 Query 13290 ACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAG 13348 | || | || ||||| || | ||| ||||| ||| ||||||| || ||| Sbjct 3436028 AGGCCACCACTCTTTCCCCCAAAGTA-GATTTTATATCTGCTATCCATCACAAGGTCCAA 3436086 Query 13349 TTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCC 13408 | |||||||| | ||| || ||| |||| || | ||||||||| ||| ||| | Sbjct 3436087 TCTGCTTTTTTCTGAACACATGGCATTGTTTCAATCACATTAAATAAAAAATCCCTTTTC 3436146 Query 13409 TTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCC 13468 || ||| || ||||| ||| | | || || ||||| ||||| |||| ||| || Sbjct 3436147 TTGGGATCT--GATGTAAGTGTCTGTTAGCAAACTGTACATCTCTGAGTGAACATTCTCG 3436204 Query 13469 AT 13470 || Sbjct 3436205 AT 3436206 >seq4 Length=47749213 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 24674284 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 24674225 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 24674224 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 24674165 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 24674164 CCACCACTCTTTCCCC 24674149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| |||||||||||||| ||| |||||||||||| || | Sbjct 24678970 AATCTGTCAGCCACAAACTCAATGTACTGTTTCATCAAAATACAGTTCATTCCAATGAGG 24678911 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || || | ||||||||||||||| Sbjct 24678910 CCAACTGGTAAAGCTTCTGTTAAAAA 24678885 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||| | || || |||| ||| || || | | |||||||| | Sbjct 24680844 TTTAAAAATCTGCATCCAAAGTGAAGACATTATCTGTGGTT-TCCGTCATAACAGCAAAA 24680786 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||| || || ||||| ||| ||||| || || |||||||||| ||| ||||| ||| Sbjct 24680785 CGTTGGTACTCTGAAACTCGTTTCTCAAAGAAATTCGTTTTTCCTTGTAAAGAAATGTTT 24680726 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||||||||| |||||||||| Sbjct 24680725 TCCATAAAATCAAAAGGATTTT 24680704 >seq22 Length=23169006 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||| || || | | ||||||||||| |||||||| |||||||| || ||||| Sbjct 2782825 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGAATGTTTTCCATGGCAATTTG 2782766 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | ||||||| | ||||||||| Sbjct 2782765 GAAGCCATAGAAACAACGGGCCTCTGTAATCTGAACTTC 2782727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430941466503786