Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq223 241 9e-59 seq12 105 5e-18 >seq223 Length=2232465 Score = 241 bits (266), Expect = 9e-59 Identities = 402/577 (70%), Gaps = 3/577 (1%) Strand=Plus/Minus Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAG 25448 ||||| ||||| || || |||| |||||| |||||||||| || ||||||| |||||| Sbjct 1613053 GGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATCTTCAGCGGCTCCACGTGATTCAGGTAA 1612994 Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508 | || || ||||||| ||| || ||||| || || || | || || || | || | Sbjct 1612993 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGACCAGTGATGTGCGTG 1612934 Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCC 25568 ||| |||||||||| || |||||||||| ||||| || || || || | ||| |||| Sbjct 1612933 ATCTTGTACGTGAGCAGGGAGTAGCTGGCAATGTTGAACGGCACACCCAGGCCCGTGTCT 1612874 Query 25569 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACAT 25628 || ||| |||||| ||||| | | || || ||| |||||| ||||| || | Sbjct 1612873 CCT-GACTGCTGGTACAGCTGGCG-GTCAGTTCACCGTTCACCACGTAGAACTGGCAGAA 1612816 Query 25629 GGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGAT 25688 || | ||||||||| || | || || | ||||| |||||||| || | || ||| Sbjct 1612815 GGCATGGCACGGAGGTAGTGTCATCAGAGGAAGATCTTTTGGGTTCCAAGCACGCATGAT 1612756 Query 25689 GATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCAC 25748 ||| | ||||| || |||||| |||| ||| || |||| || | || Sbjct 1612755 GATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCAATCACTTTCTGCAATTGGTA-AC 1612697 Query 25749 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTG 25808 || || || || |||| ||| || |||| |||||||| |||| ||||||||| Sbjct 1612696 TCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCTCCAAAATGCCTCCACTG 1612637 Query 25809 GAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAA 25868 ||| || || || | || | ||| || ||||| || | || ||| ||||||| Sbjct 1612636 GAAGCCATAAACTAGGCCAAAGTCACCTTCTTCTCTTTTGGATAATCCCAGGCTATCCAA 1612577 Query 25869 AAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 25928 |||||||| | |||||||| |||||||| || || || || || |||||||| | Sbjct 1612576 AAAGTCTCGGTGTCCATTGGCATCCCAGATTTTCACTCCTTTGGAAGATAGCTCTTTAGC 1612517 Query 25929 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGcc 25965 |||||||| || ||| |||||||||| |||| || Sbjct 1612516 TTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCC 1612480 >seq12 Length=32490354 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || ||||| |||| |||||||||||| || || || || || | ||| Sbjct 30589939 CATATCTTTGTATTCGGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 30589880 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || ||||| || | || ||| ||||||||||||||| ||| |||||||| || Sbjct 30589879 ACCTTCTTCTCTTTTGGAGAATCCCAGGCTATCCAAAAAGTCTCGGGACCCATTGGCATC 30589820 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| || || ||||| || || ||||| | |||||| || || Sbjct 30589819 CCAGATTTTCACTCCCTTGGAAGATAGTTCTTTAGCGTTTGTCGATCC 30589772 Score = 105 bits (116), Expect = 5e-18 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||||||||| || |||||||||||||||| || || || || | |||||| Sbjct 30593150 GCGATCATGTACGTGAGCAGGGAGTAGCTGGCGATGTTGAACGGCACACCCAGACCCATG 30593091 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || |||| |||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 30593090 T-CTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 30593032 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||||||||| || || || || Sbjct 30593031 GAGGGCATGGCACGGAGGTAGTGCCATCAG 30593002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340105294687389