Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq46 102 7e-17 seq6 84.2 2e-11 >seq46 Length=13992998 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || ||||| || |||| || || ||||||| | || |||||| | Sbjct 3037906 AATGCAAATCTTCGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 3037965 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| ||||| || ||| || ||||||||||| || || ||||| Sbjct 3037966 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGGATCCCTCCCGACCA 3038025 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | || |||| ||||||| | || ||||| Sbjct 3038026 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTACAA 3038085 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 3038086 CATCCAGAAAGAGTCAACCCTCCA 3038109 >seq6 Length=46294980 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 14/194 (7%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 41518144 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 41518203 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||| ||| || ||| | ||||| || |||||||||||||| Sbjct 41518204 GACAC--------CACAGAA----AATGTCAAAGCCAAAG--GGCATTCCACCTGACCAG 41518249 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| |||||||| || ||||||| | |||| | |||||||| Sbjct 41518250 CAGTGTCTGATATTTGCAGGCAAACAGTTCGAAGATGGCCACACTCTTTCAGATTACAAC 41518309 Query 25179 ATTCAAAAAGAATC 25192 || || |||||||| Sbjct 41518310 ATCCAGAAAGAATC 41518323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433286843725295