Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq126 370 1e-97 seq118 264 1e-65 seq22 123 3e-23 seq4 116 4e-21 seq36 105 8e-18 seq1 102 9e-17 seq11 100 3e-16 seq60 82.4 9e-11 >seq126 Length=6050536 Score = 370 bits (410), Expect = 1e-97 Identities = 655/946 (69%), Gaps = 18/946 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 4678230 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 4678287 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||||| | | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 4678288 CTCTGATATTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCGTCCAGTGAAATATCC 4678347 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||| ||||||| ||| | | | || | ||| || | ||| | | Sbjct 4678348 TCCATAAAGTCAAACGGATTTTCTACTCTGAAAACCTTGTGGAAACCCAGTTCCAGCATA 4678407 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||| | ||||| || || | ||| | ||||| | | | ||| || || | Sbjct 4678408 AGTGTGTCCGCCACCAACTCAATGTCCTGCTTCATTAATGTGTAGTCCATCCCAATGAGC 4678467 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908 || |||| | || || || || || || ||| ||| | || || ||| | || || Sbjct 4678468 TTCCCAGGCAAGGCCTCAGTGAGGAACTCCTGTCCTAGCCTAACAGCA-CTGGTCATTAT 4678526 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||||| | || || || | || ||||| | ||||| || ||||| Sbjct 4678527 TTCTTTTACTCTCTGCTCCGACGGTTTGTGTCCCAGGTGTTTGAGCATCAGTCAGGCAAA 4678586 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||| |||| ||||| ||||| || || | |||||| |||||||| |||||||| Sbjct 4678587 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGGG-CCAGGCAT 4678645 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 |||||||| ||| || | ||||||||| || ||||| || |||||||| || || ||||| Sbjct 4678646 CAGTCCTCGTTTCTTGAGCCAGAATATTGAGGCAAAAGAACCAGAAAAAAAGATTCCTTC 4678705 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 ||||||||||| || || | | ||||||||| |||| || || | |||||| Sbjct 4678706 CACTGCTGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACG 4678765 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||| | | |||||||| || ||||| ||||| | || |||| ||| || ||| | Sbjct 4678766 CAAGGCCCCAGCTGCCTTCTTCTTGACACAAAGCATTATTTCAATAGCATTGAAGAGAAA 4678825 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | || | | |||||||| || | || || | | ||| |||||||| ||||| Sbjct 4678826 TTCCCTTTCTTGGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATG 4678885 Query 19269 AATATTTTCTATAGCCATCT-GAAAT--------CCGTAAAAACATCTTGCTTCTGTTAT 19319 ||| ||||| || || || | | ||| | || ||||| | || ||||| || Sbjct 4678886 AATGTTTTCCATGGCAATTTGGCAATTTCTATGGCTATAGAAACAACGGGCCTCTGTAAT 4678945 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||| ||||| | ||||| ||| ||||| |||||||| ||||| |||||||| ||||| Sbjct 4678946 CTGAACTTCTTGGCTAAATCGTTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGC 4679005 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAAT 19438 ||||| || | |||||| || || | | | || | || | || || || ||| | Sbjct 4679006 GAAAAAAGCCAGAACATGTGATATGAAGTATCTCTC-TTTGGGCTTCAAGGTTGCCCAGT 4679064 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | ||| || ||||| | ||| || || ||| | ||||| ||||| |||| ||||| | Sbjct 4679065 GCTGAATGTCCTTAGAAAGATCCACCTCCTCAGCCGTCCACAAAGACACCTCCGCTTTCT 4679124 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||||||| | ||| || ||| | |||| |||||||| || ||||| Sbjct 4679125 TATACATTTGCCAAATGTCATGGTATTCGATAGGAAAGATGACAAA 4679170 >seq118 Length=6727830 Score = 264 bits (292), Expect = 1e-65 Identities = 596/881 (68%), Gaps = 45/881 (5%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||| || || | || || ||| ||||||||||| |||||||| | || || ||| ||| Sbjct 3435600 TTGGTACTCTGAAATTCATTTCTCAAAGAAATTCGTTTTTCCTTGCAAAGAAATATTTTC 3435659 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAG 18791 |||||||||||| ||||||| | | | | | ||| |||||| | ||||| |||| Sbjct 3435660 CATAAAATCAAAGGGATTTTCTGCCTGGAAAACCTTTGAGAATCCAAGTTCTACAAGTAA 3435719 Query 18792 TCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 ||| | || ||||| | | |||| ||||| ||||| | |||||||||||| | | Sbjct 3435720 TCTGTTAGCCACAAACTCAGTATACTGTGT-CATCAAAATACAATTCATTCCAACGAGGA 3435778 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT-A 18909 ||| |||| || ||||| | ||| || || || || || || ||||| ||||| | Sbjct 3435779 CAACTGGTAAAGCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCCTCA---ATAATGA 3435835 Query 18910 GATACA--ACTCTATCTTCATTAGGAGGGTATA-GAAGATGTTTAAACATCAAACATGCA 18966 | | ||||| ||||| ||| | || |||| | | ||| |||| | ||| Sbjct 3435836 TCTCCCTGACTCTCTCTTCTGAAGGCTTATTTACGAAG-TATCAAAATATCAGGTAAGCA 3435894 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 || ||||| || || || || ||||| || || | |||||| ||||| || | |||| | Sbjct 3435895 AAGTCACAGTGCAGACCTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCAGAC 3435954 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 || || |||| || |||| | ||||||||| |||||| ||||| || ||||| || | | Sbjct 3435955 ATAAGAACTCTCTTCTTTAGCTAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCTT 3436014 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT-TATGA-ATCC 19144 ||||| || ||||| || || | |||||| || || ||| | |||| | || |||| Sbjct 3436015 TCTACAGCAGCAAAGGCCACCACTCTTTCCCCCAAAGTAGATT--TTATATCTGCTATCC 3436072 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 || || | |||||| || || || | |||||||||||||| || || |||||||| Sbjct 3436073 ATCACAAGGTCCAATCTGCTTTTTTCTGAACACATGGCATTGTTTCAATCACATTAAATA 3436132 Query 19205 GATACATACGCTCATCT--GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 | | || | || ||| | ||| | | || | ||| | | ||||||||||| || Sbjct 3436133 -AAAAAT-CCCTTTTCTTGGGATC--TGATGTAAGTGTCTGTTAGCAAACTGTACATCTC 3436188 Query 19263 TGAATGAATATTTTCTAT-AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 ||| |||| ||| || || || ||| || || | |||| | || Sbjct 3436189 TGAGTGAACATTCTCGATGAG--------AATTTGTGAA---------CCTCTGGAACCT 3436231 Query 19322 GTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 | || || || | |||| |||||||| | ||||||||||| ||||||| Sbjct 3436232 GCACCTCCTGAC-------TGACACCACGTTTTCATTTATAATTCCATCACTGGCTGCAA 3436284 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCAT 19441 |||| ||||| | || | ||| ||| |||||||| | | | ||||| | | Sbjct 3436285 AAAAGGCTAAAATGTGAGAGACCCAATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAG 3436344 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | |||||| ||||| || || ||||| ||||||| || || || | | | | ||| | Sbjct 3436345 GGAGATCTTTTGATAAGTCAACCTCTTCTGCTGTCCAGAAGGATGCTTGTTCCTGTTTGT 3436404 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACA 19542 | | ||||| ||||| | || || || | ||| || ||| Sbjct 3436405 ATGTTTTCCAAGTATCAGGGTACTGGATTGCAAAGATGACA 3436445 >seq22 Length=23169006 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 2785906 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2785847 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 2785846 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGG 2785787 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 2785786 CTACAACACGTTCTCC 2785771 Score = 118 bits (130), Expect = 1e-21 Identities = 115/146 (79%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 2788376 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 2788319 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||||||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 2788318 CTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 2788259 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 2788258 TCCATAAAGTCAAATGGATTTTCTAC 2788233 >seq4 Length=47749213 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || ||||| || ||| Sbjct 24674282 TCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCTTT 24674223 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 24674222 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 24674163 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 24674162 ACCACTCTTTCCCC 24674149 >seq36 Length=16585812 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||| ||| Sbjct 11366889 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCTCATC 11366946 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | |||||||| | ||||| || |||||||| ||||| ||||| || | || ||| Sbjct 11366947 CTCTGATATTCCCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGGGAAATATTC 11367006 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 11367007 TCCATAAAGTCAAATGGATTTTCTAC 11367032 >seq1 Length=73491278 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || ||||| ||||| || ||| Sbjct 31005461 TGAAATTCTCCTGACAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAT 31005402 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || ||||| ||||| ||||||||||| | |||| | ||| || Sbjct 31005401 TCATTATTCCCCAGGATCTGAGCGGTTGAAGCTGTAGGCATTGGGGCAATAAGTAAACTG 31005342 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 31005341 TTTCTTATACCATA 31005328 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 31008377 TCCAGCCGTAGAAGTGCATACTAGTCAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 31008318 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || ||||||||||| |||||||| || |||||||| | | | Sbjct 31008317 TCAAAGACTGGCTTTGATCAATAAAAGCACCTCTCTCGGCTGCCATTGTGAGGACAGTTT 31008258 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || |||||||| |||||||||| || || | ||| || || Sbjct 31008257 TCTGAGAAATTTCCCATACAGTTTTATAAAGCTGCTTCAGGTCATCAGG 31008209 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| |||| || | | ||| Sbjct 30976463 GTGCCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 30976404 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| || || ||| || || |||| ||| || | ||| ||| Sbjct 30976403 TATGTTTCAATTGCAGCATCAATGTCTTCTTGGTGAATCCCTACAGAGACCCTCATCAAC 30976344 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 30976343 ATATGCTGCGGTCTTTCA 30976326 >seq11 Length=36342412 Score = 100 bits (110), Expect = 3e-16 Identities = 134/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 19361 CTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTG 19420 |||| |||||||| ||||| ||||| || | |||||| || || | | | || || | Sbjct 29862658 CTATGCCATCACTTGCTGCGAAAAAAGCCAGAACATGTGATATGAAGTATCTCTCTTCAG 29862599 Query 19421 AGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCT-ACTTCTTCAACTGTCCAA 19479 | || || | ||| | | ||| || ||||| | ||| || || ||| | |||||| Sbjct 29862598 GATTCAAGGTTTCCCAGTGCTCAATGTCCTTAGAAAGATCCCACCTCCTCAGCCGTCCAA 29862539 Query 19480 AAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539 ||||| ||||| ||||| |||||||| | ||| || ||| | |||| |||||||| || Sbjct 29862538 AAAGACGCCTCCGCTTTCTTATACATTTGCCAAATGTCATGGTATTCGATAGGAAAGATG 29862479 Query 19540 ACAAA 19544 ||||| Sbjct 29862478 ACAAA 29862474 >seq60 Length=11483068 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/102 (78%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 143329 AAGATG-CATAATGGGACATTAGAATTTACCAGTATTGATGCACATAATGGTTATGTAAA 143387 |||||| ||| |||| || | ||||| ||||| ||||||||||| ||||| | Sbjct 4435197 AAGATGTCATGATGGCACCATTGAATTCACCAGCATTGATGCACACAATGGCGTGGGCCC 4435138 Query 143388 TTCACGACGTGGAGATCTTGAAATACTTGGTTATTGCATGAT 143429 ||||||||||| ||| | ||||||| ||||||||||||||| Sbjct 4435137 ATCACGACGTGGTGATTTGGAAATACGTGGTTATTGCATGAT 4435096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562054043576520