Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq223 325 3e-84 seq283 150 1e-31 seq12 143 2e-29 seq11 125 6e-24 seq17 87.8 1e-12 >seq223 Length=2232465 Score = 325 bits (360), Expect = 3e-84 Identities = 491/690 (71%), Gaps = 10/690 (1%) Strand=Plus/Minus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 ||||| ||||| || || |||| |||||| |||||||||| |||||||||| |||||| Sbjct 1613053 GGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATCTTCAGCGGCTCCACGTGATTCAGGTAA 1612994 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886 | || || ||||||| || || ||||| || || || | || || |||| ||| | Sbjct 1612993 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGACCAGTGATGTGCGTG 1612934 Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 29946 ||| |||||||||| || ||||||||||| ||||| || || || || || ||| |||| Sbjct 1612933 ATCTTGTACGTGAGCAGGGAGTAGCTGGCAATGTTGAACGGCACACCCAGGCCCGTGTCT 1612874 Query 29947 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30006 || ||| |||||| ||||| | | || || |||| |||||| ||||| || | | Sbjct 1612873 CCTGACTGCTGGTACAGCTGGC-GGTCAGTTCACCGTTCACCACGTAGAACTGGCAGAAG 1612815 Query 30007 GTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30063 | ||||||||||| || | ||| |||| ||| ||||| |||||||| || | || | Sbjct 1612814 GCATGGCACGGAGGTAGTGTCATCAGAGG---AAGATCTTTTGGGTTCCAAGCACGCATG 1612758 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123 ||||| | ||||| || |||||| | ||||| || | | || |||| || | Sbjct 1612757 ATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCAATCACTTTCTGCAATTGGT-A 1612699 Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183 || || || || || |||| ||| || |||| |||||||| |||||||||||| Sbjct 1612698 ACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCTCCAAAATGCCTCCAC 1612639 Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30243 ||||| || || || | || | ||| || ||||| || | || ||| | ||| Sbjct 1612638 TGGAAGCCATAAACTAGGCCAAAGTCACCTTCTTCTCTTTTGGATAATCCCAGGCTATCC 1612579 Query 30244 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30303 |||||||||| | || ||||| |||||||| || || || || || |||||||| Sbjct 1612578 AAAAAGTCTCGGTGTCCATTGGCATCCCAGATTTTCACTCCTTTGGAAGATAGCTCTTTA 1612519 Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363 | |||||||| || ||| |||||||||| |||||||| || ||||||| || || Sbjct 1612518 GCTTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACA 1612459 Query 30364 CTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAAC 30423 | ||||| || || || ||||| | | || ||| ||| |||||| |||||| Sbjct 1612458 CATTTGGTTGTCAGCAGTGGAAATTCATCTTTCCGGCTGTAGCGGGCCTGCATGCCAAAC 1612399 Query 30424 ACGGACAAGACT-CCCGTGCCCGTCCTGTC 30452 || ||| ||| | || ||| |||| | ||| Sbjct 1612398 ACCGAC-AGAGTGCCGGTGTCCGTGCGGTC 1612370 >seq283 Length=1095284 Score = 150 bits (166), Expect = 1e-31 Identities = 232/325 (71%), Gaps = 7/325 (2%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 || |||||| ||| | || |||| ||||| ||||||| || || | ||||| ||||| Sbjct 231029 TGAGAAAGG-TCTTAGTTCTCTCTGACGCTGAATCTTCAGTGGCTCAATGTGATTCAGGT 231087 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | | || ||||||| || || ||||| || || || | || ||||||||||| | Sbjct 231088 AAATATATGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGACCGGTGACGTGTG 231147 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 ||||| || ||||| || |||| ||||| ||||| || || | || || || |||| Sbjct 231148 AGATCATATAGGTGAGCAGGGAGTGACTGGCCATGTTGAATGGCAAGCCCAGGCCTATGT 231207 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGCTCACGTAAAACTGACAC 30003 | || ||| |||||| |||||||| || ||||| || ||| | | | | ||||| || Sbjct 231208 CTCCTGACTGCTGGTACAGCTGACAGGATAGCTCACCAGTCAC-CCTGAAGAACTGGCAA 231266 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 30061 | || || ||| ||| || ||||| |||| || ||||| |||||||| || || Sbjct 231267 AGGGCATGATACGAAGGCAGCGCCATCAGAGGTACA--TCTTTTGGGTTCCAAGCACATG 231324 Query 30062 CGATGATGCGCCTGTCTTCTGGGTT 30086 |||||| | |||| || ||||| Sbjct 231325 TGATGATTCTTCTGTTGTCAGGGTT 231349 >seq12 Length=32490354 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || ||||||||||||||||| || || Sbjct 30593165 AGACCAGTGATGTGCGCGATCATGTACGTGAGCAGGGAGTAGCTGGCGATGTTGAACGGC 30593106 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || |||| |||||| ||||| || || ||||| |||| | Sbjct 30593105 ACACCCAGACCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 30593046 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 30593045 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGTAGTGCCATCAG 30593002 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || ||||| ||||||||||||||||| || || || || |||| ||| Sbjct 30589939 CATATCTTTGTATTCGGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 30589880 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| || | ||| ||| | ||||||||||||| ||| || ||||| || Sbjct 30589879 ACCTTCTTCTCTTTTGGAGAATCCCAGGCTATCCAAAAAGTCTCGGGACCCATTGGCATC 30589820 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || || ||||| | |||||| || || Sbjct 30589819 CCAGATTTTCACTCCCTTGGAAGATAGTTCTTTAGCGTTTGTCGATCC 30589772 >seq11 Length=36342412 Score = 125 bits (138), Expect = 6e-24 Identities = 173/240 (72%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 112099 TCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCG 112158 || || || || || ||||| |||| ||||| ||||| | | ||||| |||||| || Sbjct 15735026 TCCTTGAGTTCTCTACTGAGAACTATATTTATTCTGTCCTTTAAAGGTCGATTCTTCTCA 15734967 Query 112159 GGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAA 112218 || ||||||||||| ||||| |||||||| ||||||| ||||| || ||| |||||| Sbjct 15734966 GGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAA 15734907 Query 112219 GACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCAC 112278 || || | ||||| | |||| | || || || || | ||| || |||| Sbjct 15734906 GAGGTTGTGGTCATTCTTTGAAAATAGTTGAATTCATTCCTGAGT------GGGGGCCAG 15734853 Query 112279 GGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACACGGCCACGATACCGTTCAG 112337 |||||||| || || || ||||||||| || ||||| |||| || | ||| | ||| || Sbjct 15734852 GGCAGATCCCCATTCTTGCCGATGCCCCTGTTCTGG-GACACAGCGATGATGCAGTTTAG 15734794 >seq17 Length=29863360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 14683140 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 14683199 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 14683200 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 14683247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408578790649589