Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq158 122 2e-22 seq25 118 2e-21 seq21 111 3e-19 seq9 111 3e-19 seq178 107 3e-18 seq72 107 3e-18 seq99 95.1 2e-14 seq65 91.5 3e-13 seq19 86.0 1e-11 >seq158 Length=4245986 Score = 122 bits (134), Expect = 2e-22 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| ||| || | ||| | ||| | ||| || ||| || Sbjct 3727860 TTTCTTAGCACCACCACAAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 3727801 Query 171893 ATAATCTGATAAAG-ATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 || || || |||| ||| | | || |||| ||| || ||||||||||| | ||| || | Sbjct 3727800 GTAGTCAGACAAAGTATC-TCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGTCTTTGCT 3727742 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 | ||||| || |||||||| ||||| || || || || ||||| ||| ||||| | Sbjct 3727741 GATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCTATTGTATCCG 3727682 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 | | ||| || || ||||| ||||| || || || | ||||| | || |||||||| | Sbjct 3727681 AGGGTTCAACCTCGAGAGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCT 3727622 Query 172072 T 172072 | Sbjct 3727621 T 3727621 >seq25 Length=21972308 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| ||| || | ||| | ||| | ||| || ||| || Sbjct 20948586 TTTCTTAGCACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 20948527 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| ||| || ||||||||||| | ||| || || Sbjct 20948526 GTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTG 20948467 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || || || || ||| ||||| || Sbjct 20948466 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACCTTTTCTATCGTATCCGA 20948407 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || ||||| ||||| || || || | ||||| | || |||||||| || Sbjct 20948406 GGGTTCAACCTCAAGAGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTT 20948347 >seq21 Length=25602908 Score = 111 bits (122), Expect = 3e-19 Identities = 170/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| |||||| | || | ||| | ||| || ||| || Sbjct 20609909 TTTCTTAGCACCACCACGAAGTCTTAATACAAGGTGAAGAGTGGACTCCTTTTGAATGTT 20609850 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || | || ||| | || |||| ||| || ||||||||||| | ||| || || Sbjct 20609849 GTAGTCAGACACAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTG 20609790 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||||||||| || || || || ||||| ||| ||||| | Sbjct 20609789 ATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCTATTGTATCCAA 20609730 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATGAATATCTGCATTT 172071 | ||| | || ||||| ||||| || || ||| ||| | | ||||||||||| | Sbjct 20609729 GGGTTCAATCTCGAGAGTGATGGTCTTCCCCCATAAGGGTTATTACAAATATCTGCATCT 20609670 Query 172072 T 172072 | Sbjct 20609669 T 20609669 >seq9 Length=38779656 Score = 111 bits (122), Expect = 3e-19 Identities = 176/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 171824 ACTTTTTAGTTT-CATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTT 171882 ||||||| ||| | || |||||| | ||||| ||| || | ||| | ||| | ||| | Sbjct 2389032 ACTTTTTCTTTTTCTTAGCACCACCACAAAGTCTTAACACAAGATGAAGAGTGGACTCCT 2389091 Query 171883 TAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTA 171942 | ||| || || || || |||| | | || || | ||| || ||||||||||| | Sbjct 2389092 TTTGAATGTTGTAGTCAGACAAAGTACATCAATCTTCTAGTTGCTTGCCAGCAAAAATGA 2389151 Query 171943 ATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002 ||| || || ||||| || ||||||| ||||| || || || ||| ||||| || Sbjct 2389152 GTCTTTGCTGATCAGGAGGAATTCCTTACTTATCCTGGATCTTGGCTTTCACATTTTCTA 2389211 Query 172003 TAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATA 172062 | ||||||| | ||| || | || || |||||||| || | ||| | ||| | ||| | Sbjct 2389212 TCATATCTGAGGGTTCAACCTTGAGTGTGATGGTTTTCCCTG-TAAGGGTTTTACGAAAA 2389270 Query 172063 TCTGCATTTT 172072 ||||||| || Sbjct 2389271 TCTGCATCTT 2389280 >seq178 Length=3410906 Score = 107 bits (118), Expect = 3e-18 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| |||||||||| ||||| | | || | ||| | ||| | ||| || ||| || Sbjct 768821 TTTCTTAATACCACCATGAAGTCTTCACACAAGATGAAGAGTGGACTCCTTTCGAATGTT 768762 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || |||| | | || |||| | | || ||||||||||| |||| || || Sbjct 768761 GTAGTC----AAAGTATATCCATCTTCCAGTCGCTTGCCAGCAAAAATGGATCTTTGCTG 768706 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||||||| ||||| || || || | |||||||| ||| | |||||| Sbjct 768705 ATCAGGAGGAGTTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGCATCTGA 768646 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || | ||| ||||| || || || | ||||| ||||| |||||||| || Sbjct 768645 AGGTTCATCCTCAAAAGTGATGGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCATCTT 768586 >seq72 Length=9996315 Score = 107 bits (118), Expect = 3e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| ||| || | ||| | ||||| ||| || |||| || Sbjct 7284761 TTTCTTAGCACCACCACGAAGTCTTAACACAAGATGAAGAGTAGACTCCTTTCAAATGTT 7284820 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| ||| || ||||||| ||| | ||| || || Sbjct 7284821 GTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAGAATGAGTCTTTGCTG 7284880 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG--TATCT 172010 ||||| | |||||||||||||| || || || |||||| | || ||| ||||| Sbjct 7284881 ATCAGGAGAAATTCCTTCTTTATCCTGGATCTTGGCCTTTACACT--TTCTAGTATATCT 7284938 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACC 172042 |||| ||| | | ||||| | |||||| || Sbjct 7284939 GACGGTTCAATCTGGAGAGTGACGGTTTTTCC 7284970 >seq99 Length=7922563 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171923 TTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTAT 171982 ||| || ||||||||||| | ||| || || ||||| || |||||||| ||||| || || Sbjct 586247 TTGCTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 586306 Query 171983 TTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 172042 || || ||||| ||| ||||| || | ||| || || ||||| ||||| || || Sbjct 586307 CTTGGCCTTCACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCC 586366 Query 172043 AGTTAATGTTTTAATGAATATCTGCATTTT 172072 || | ||||| | ||| |||||||| || Sbjct 586367 CGTGAGGGTTTTTACGAAAATCTGCATCTT 586396 >seq65 Length=11138919 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| || ||||||||||| | || || || ||||| || || ||||| ||| Sbjct 6551944 TCTTCCAGTTGCTTGCCAGCAAAAATGAGTCCTTGCTGATCAGGAGGAATGCCTTCCTTA 6551885 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || ||||| ||| |||||||| | ||| || || ||||| ||| Sbjct 6551884 TCCTGGATCTTGGCCTTCACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATG 6551825 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || | || | ||||| | ||| |||||||| || Sbjct 6551824 GTCTTCCTCGTGAGGGTTTTTACGAAAATCTGCATCTT 6551787 >seq19 Length=27850971 Score = 86.0 bits (94), Expect = 1e-11 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 171833 TTTCATAA-TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATAT 171891 |||| ||| ||||||| | ||||| ||| || ||||| | ||| | ||| || ||| | Sbjct 6497355 TTTCTTAAGTACCACCACGAAGTCTTAACACAAAATGAAGAGTGGACTCCTTTTGAATGT 6497414 Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 ||||| || |||| || | || |||| || || ||||||||||| | ||| || | Sbjct 6497415 GGTAATCAGACAAAGTATGTCCATCTTCCAGTTCCTT-CCAGCAAAAATGAGTCTTTGCT 6497473 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 | ||||| | ||||| || || || | || | |||||||| ||| || | | Sbjct 6497474 GTTCAGGAGAAATTCCCTCCACATTCTGGTTCTTGATCTTTACATTTTCTATCATAACCG 6497533 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 | | || || || || | ||| | || || || || ||||| ||||| ||||| || | Sbjct 6497534 AGGGTTAAACCTCAAGGATGATGTTCTTCCCTGTAAAGGTTTTTATGAAAATCTGTATCT 6497593 Query 172072 T 172072 | Sbjct 6497594 T 6497594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905047828439400