Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 104 3e-17 seq22 91.5 2e-13 seq18 86.0 7e-12 seq4 84.2 2e-11 >seq2 Length=55144334 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 42623638 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGTCGAGTTCCAAACTGA 42623697 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| |||||||||||| |||||||| || ||| Sbjct 42623698 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAGTTCTGAGCCAAATTCACA 42623757 Query 117425 ATCGT 117429 || || Sbjct 42623758 ATAGT 42623762 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| || || ||||||||||| Sbjct 42623638 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGTCGAGTTCCAAACTGA 42623697 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| |||||| || |||||||||||||||||| Sbjct 42623698 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAGTTCTGAGCCAAATTCACA 42623757 Query 152149 ATCGT 152153 || || Sbjct 42623758 ATAGT 42623762 >seq22 Length=23169006 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 2785904 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 2785845 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || |||||| |||||||| ||||| || ||||||||| Sbjct 2785844 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGGCT 2785785 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 2785784 ACAACACGTT 2785775 >seq18 Length=28711273 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| |||| || |||| |||||| |||||| || | ||||| || || Sbjct 23605764 GTGAAAATGTATCGAGGACTGGCAGAATCCTTACCACCATGTAGCCTGGTACCAAACTGA 23605705 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | ||| ||||||||| || || || |||||||| || |||||||| |||| | Sbjct 23605704 CCAATAGGCCGCAAGAGGTTTAGATTATTACTACCCACAAAATTCTGAGCCAAATTGATA 23605645 Query 117425 ATCGT 117429 || || Sbjct 23605644 ATGGT 23605640 >seq4 Length=47749213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | || ||||||||||| || | ||||| Sbjct 24674284 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 24674225 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | ||| || || ||| || || || |||||| || ||||| ||| ||||||| Sbjct 24674224 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 24674165 Query 74890 CGAC 74893 | || Sbjct 24674164 CCAC 24674161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547162694321400