Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq6 109 7e-19 >seq6 Length=46294980 Score = 109 bits (120), Expect = 7e-19 Identities = 252/372 (68%), Gaps = 12/372 (3%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||| ||| ||||||| | |||||| || ||||| || |||||| | || ||||| Sbjct 34722885 CCCCTTAGCAAAGAAGAGGCGGGGTTTCCAATAGCCTATTCTATCGTGGTTCATCACAAA 34722944 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||| ||| |||| | ||||||||||||||||| || ||||| |||| ||| || Sbjct 34722945 ATCGAAATGCTCGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATC 34723004 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCC--GGGGC-GTCTCGGCCATCGCCAGG 13847 || |||||| || || || || | ||| | || || || ||| || Sbjct 34723005 CATGTGGACAGAAAATC---AGAGCAGCCCTTCCTAGCTGCGGTGATGGGCATTGCATCC 34723061 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 || ||| ||| || ||||| | || | ||||| || | || ||||| Sbjct 34723062 TGTTTCAATAATGTCTTTGTGGCCAGTCAATTGGAGAGTGTGGTTTATGCATCATGGAGC 34723121 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGT-CA-AGTGG 13964 || || ||||| ||||||| ||||||| |||||| || | | ||| || | ||| Sbjct 34723122 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACCTTCACAGAAT---GCGTGCAGACTGG 34723178 Query 13965 AGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTG 14024 | |||| || | || || ||||| ||||| || || |||| |||||||| || ||||| Sbjct 34723179 AAGTACTTGATAAATCTTTGCGGTATGGATTTTCCCATCAAAACCAACCTAGAAATCGTC 34723238 Query 14025 CGGGCGCTGAAG 14036 || ||| ||| Sbjct 34723239 AGGAAGCTCAAG 34723250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658675030567680