Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq223 329 3e-85 seq283 147 2e-30 seq12 147 2e-30 seq11 122 7e-23 seq17 87.8 1e-12 >seq223 Length=2232465 Score = 329 bits (364), Expect = 3e-85 Identities = 492/690 (71%), Gaps = 10/690 (1%) Strand=Plus/Minus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 ||||| ||||| || || |||| |||||| |||||||||| ||||||| || |||||| Sbjct 1613053 GGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATCTTCAGCGGCTCCACGTGATTCAGGTAA 1612994 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 | || || ||||||| | || ||||| || || || | || || |||| ||| | Sbjct 1612993 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGACCAGTGATGTGCGTG 1612934 Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019 ||| |||||||||| || ||||||||||| ||||| || || || || || ||| |||| Sbjct 1612933 ATCTTGTACGTGAGCAGGGAGTAGCTGGCAATGTTGAACGGCACACCCAGGCCCGTGTCT 1612874 Query 30020 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30079 || ||| |||||| ||||| | | || || |||| |||||| ||||| || | | Sbjct 1612873 CCTGACTGCTGGTACAGCTGGCG-GTCAGTTCACCGTTCACCACGTAGAACTGGCAGAAG 1612815 Query 30080 GCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30136 || ||||||||||| || | ||| |||| ||| ||||| |||||||| || | || | Sbjct 1612814 GCATGGCACGGAGGTAGTGTCATCAGAGG---AAGATCTTTTGGGTTCCAAGCACGCATG 1612758 Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196 ||||| | ||||| || |||||| | ||||| || | | || |||| || | Sbjct 1612757 ATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCAATCACTTTCTGCAATTGGTA- 1612699 Query 30197 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256 || || || || || |||| ||| || |||| |||||||| |||||||||||| Sbjct 1612698 ACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCTCCAAAATGCCTCCAC 1612639 Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30316 ||||| || || || | || | ||| || ||||| || | || ||| | ||| Sbjct 1612638 TGGAAGCCATAAACTAGGCCAAAGTCACCTTCTTCTCTTTTGGATAATCCCAGGCTATCC 1612579 Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTG 30376 |||||||||| | || ||||| |||||||| || || || || ||| |||||||| Sbjct 1612578 AAAAAGTCTCGGTGTCCATTGGCATCCCAGATTTTCACTCCTTTGGAAGATAGCTCTTTA 1612519 Query 30377 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30436 | |||||||| || ||| |||||||||| |||||||| || ||||||| || || Sbjct 1612518 GCTTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACA 1612459 Query 30437 CTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAAC 30496 | ||||| || || || ||||| | | || ||| ||| | |||||| |||||| Sbjct 1612458 CATTTGGTTGTCAGCAGTGGAAATTCATCTTTCCGGCTGTAGCGGGCCTGCATGCCAAAC 1612399 Query 30497 ACGGACAAGACT-CCCGTGCCCGTCCTGTC 30525 || ||| ||| | || ||| |||| | ||| Sbjct 1612398 ACCGAC-AGAGTGCCGGTGTCCGTGCGGTC 1612370 >seq283 Length=1095284 Score = 147 bits (162), Expect = 2e-30 Identities = 231/325 (71%), Gaps = 7/325 (2%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 || |||||| ||| | || |||| ||||| ||||||| || || | || || ||||| Sbjct 231029 TGAGAAAGG-TCTTAGTTCTCTCTGACGCTGAATCTTCAGTGGCTCAATGTGATTCAGGT 231087 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | | || ||||||| | || ||||| || || || | || ||||||||||| | Sbjct 231088 AAATATATGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGACCGGTGACGTGTG 231147 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 ||||| || ||||| || |||| ||||| ||||| || || | || || || |||| Sbjct 231148 AGATCATATAGGTGAGCAGGGAGTGACTGGCCATGTTGAATGGCAAGCCCAGGCCTATGT 231207 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGCTCACGTAAAACTGACAC 30076 | || ||| |||||| |||||||| || ||||| || ||| | | | | ||||| || Sbjct 231208 CTCCTGACTGCTGGTACAGCTGACAGGATAGCTCACCAGTCAC-CCTGAAGAACTGGCAA 231266 Query 30077 ATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 30134 | ||| || ||| ||| || ||||| |||| || ||||| |||||||| || || Sbjct 231267 AGGGCATGATACGAAGGCAGCGCCATCAGAGGTACA--TCTTTTGGGTTCCAAGCACATG 231324 Query 30135 CGATGATGCGCCTGTCTTCTGGGTT 30159 |||||| | |||| || ||||| Sbjct 231325 TGATGATTCTTCTGTTGTCAGGGTT 231349 >seq12 Length=32490354 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||||||||| || ||||||||||||||||| || || Sbjct 30593165 AGACCAGTGATGTGCGCGATCATGTACGTGAGCAGGGAGTAGCTGGCGATGTTGAACGGC 30593106 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || |||| |||||| ||||| || || ||||| |||| | Sbjct 30593105 ACACCCAGACCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 30593046 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| ||||||||||| || ||||| || Sbjct 30593045 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGTAGTGCCATCAG 30593002 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || ||||| ||||||||||||||||| || || || || |||| ||| Sbjct 30589939 CATATCTTTGTATTCGGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 30589880 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| || | ||| ||| | ||||||||||||| ||| || ||||| || Sbjct 30589879 ACCTTCTTCTCTTTTGGAGAATCCCAGGCTATCCAAAAAGTCTCGGGACCCATTGGCATC 30589820 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| || ||||| | |||||| || || Sbjct 30589819 CCAGATTTTCACTCCCTTGGAAGATAGTTCTTTAGCGTTTGTCGATCC 30589772 >seq11 Length=36342412 Score = 122 bits (134), Expect = 7e-23 Identities = 161/221 (73%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 110398 TCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCG 110457 || || || || || ||||| |||| ||||| ||||| | | ||||| |||||| || Sbjct 15735026 TCCTTGAGTTCTCTACTGAGAACTATATTTATTCTGTCCTTTAAAGGTCGATTCTTCTCA 15734967 Query 110458 GGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAA 110517 || ||||||||||| ||||| |||||||| ||||||| ||||| || ||| |||||| Sbjct 15734966 GGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAA 15734907 Query 110518 GACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCAC 110577 || || | ||||| | |||| | || || || || | ||| || |||| Sbjct 15734906 GAGGTTGTGGTCATTCTTTGAAAATAGTTGAATTCATTCCTGAGT------GGGGGCCAG 15734853 Query 110578 GGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 110616 |||||||| || || || ||||||||| || ||| |||||| Sbjct 15734852 GGCAGATCCCCATTCTTGCCGATGCCCCTGTTCTGGGACAC 15734812 >seq17 Length=29863360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 14683140 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 14683199 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 14683200 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 14683247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406271809780956