Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq11 230 2e-55 seq122 129 5e-25 seq27 118 9e-22 seq12 93.3 3e-14 seq283 86.0 5e-12 seq170 82.4 6e-11 >seq11 Length=36342412 Score = 230 bits (254), Expect = 2e-55 Identities = 385/549 (70%), Gaps = 11/549 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || ||||| || | || | |||||| || || || || | ||||| Sbjct 15734794 CTAAACTGCATCATCGCTGTGTCCCAGAACAGGGGCATCGGCAAGAATGGGGATCTGCCC 15734853 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || | |||||||| || ||||||||| |||||| | | ||||| Sbjct 15734854 TGGCCCCCACTCAGGAATGAATTCAACTATTTTCAAAGAATGACCACAACCTCTTCAGTA 15734913 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 15734914 GAAGGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 15734971 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || ||||||||||| | |||||||||||| | || || || | Sbjct 15734972 AGAATCGACCTTTAAAGGACAGAATAAATATAGTTCTCAGTAGAGAACTCAAGGAATCTT 15735031 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAAT-AGG- 2432 ||| || ||||| ||| |||| |||||| | ||| | || || ||| ||| | ||| Sbjct 15735032 CACAAGGAGCTCATTTTCTTGCTAAAAGTCTGGATGATGC-CT-TAAAACATATTGAGGA 15735089 Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492 |||||||||| | | | || || | | |||||||| | || || || ||||| ||| | Sbjct 15735090 ACCAGAATTAGCAAATAAAGTAGACATGGTTTGGATAGTAGGGGGCAGTTCTGTTTATAA 15735149 Query 2493 GGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATT 2552 ||| ||| | | | || | | |||||| | |||||||| |||| | || Sbjct 15735150 GGAAGCCATGAATCAACCAGGCCATGTTAAACTGTTTGTGACAAGGATCATGCAGGACTT 15735209 Query 2553 TGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612 ||||||||| |||| || || |||||| || | | ||||| |||| || | |||| Sbjct 15735210 TGAATGTGACACATTTTTTCCTGAAATTGATTTGAAGAAATATAAACTTCTCTCAGAATA 15735269 Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATA 2672 |||||||||| |||| ||| || ||||| || || |||| |||| |||||| | || Sbjct 15735270 CCCAGGTGTTCTTTCTGACGTCCAGGAAGAGAAAGGCATTAAGTACAGATTTGAAGTGTA 15735329 Query 2673 TGaaaaaaa 2681 |||||| || Sbjct 15735330 TGAAAAGAA 15735338 >seq122 Length=6483299 Score = 129 bits (142), Expect = 5e-25 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| || ||||||||| | || || |||||| ||||||||||| | || || Sbjct 1887939 ATTGTGACCTGGCAAAAAAAGACGGCTATAATCCCAGACAACATGGCCACCTACAGCAAG 1887998 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 || |||||||| || ||||| || ||| | |||| ||| || ||||| | | Sbjct 1887999 ATACATGGGGTTGTAGTCCAGCCTTACTATAAAAGCAGGATGACCATCACCGAGCTGGAA 1888058 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||| |||| || ||||||||||| || || |||| ||||||||||| ||| | Sbjct 1888059 CTCGAAAACTCAACCATCACCTTCTGGAATACCACCCTGGAGGATGAAGGGTGTTACCTG 1888118 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCTTTTT 1529 ||| | || || || ||||| |||||| || ||||||| | || || ||||||| | Sbjct 1888119 TGTCTCTTCAATACCTTTGGTGCTGGGATAATTTCAGGAAGAACCTGCCTCACCCTTTAT 1888178 Query 1530 G 1530 | Sbjct 1888179 G 1888179 >seq27 Length=20685099 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | || || || ||||||||| Sbjct 12585142 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATCGTGGCCTTCTTTGAG 12585201 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 12585202 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 12585261 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 12585262 ATCGCCCTGTGGATGACTGA 12585281 >seq12 Length=32490354 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || || || Sbjct 30593165 AGACCAGTGATGTGCGCGATCATGTACGTGAGCAGGGAGTAGCTGGCGATGTTGAACGGC 30593106 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||||||||||||| |||| | |||||||| ||||| || ||||| ||||| | Sbjct 30593105 ACACCCAGACCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 30593046 Query 118654 ACATAAAACTG 118664 || || ||||| Sbjct 30593045 ACGTAGAACTG 30593035 >seq283 Length=1095284 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 118465 TTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCA 118524 |||||||||||||||||||||| || | || ||||| || | ||||||| || ||| Sbjct 231063 TTCAGTGGCTCAATGTGATTCAGGTAAATATATGCATCTCCCAAAGTATGTACAAAGTCA 231122 Query 118525 CCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACA 118584 || || | || || || | ||| | ||||| || || | || || ||||| | Sbjct 231123 CCTGGCTTCAGACCGGTGACGTGTGAGATCATATAGGTGAGCAGGGAGTGACTGGCCATG 231182 Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 || || || | ||||| || |||||| |||| |||||||| || || || ||||| Sbjct 231183 TTGAATGGCAAGCCCAGGCCTATGTCTCCTGACTGCTGGTACAGCTGACAGGATAGCTCA 231242 Query 118645 CC 118646 || Sbjct 231243 CC 231244 >seq170 Length=3845361 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 118465 TTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCA 118524 ||||| ||||||||||||||| | | | | ||||| || | ||||||| || ||| Sbjct 2788957 TTCAGCAGCTCAATGTGATTCAGGAA-ATACGTGCATCTCCCAAGGTATGTACAAAGTCA 2789015 Query 118525 CCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACA 118584 || || | | || | ||| | |||||| | || | || || |||||| | Sbjct 2789016 CCTGGCTTTGGACCCGCGGAGTGCACCATCATGCAGGTGACCAGGGAGTGGCTGGCCATG 2789075 Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 || || | |||||||| ||||||||| |||| | ||||| || ||||| | ||||| Sbjct 2789076 TTGAACCGCACACCCAGGCCCATGTCTCCTGACCACTGGTGCAGCTGGCAGCACAGCTCA 2789135 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGG 118696 || | | || ||||||| | | | || ||||||||||| |||||| Sbjct 2789136 CCAGTCACCACGAAAAACTGGCAGAGGGCCTGGCATGGAGGCAGCGCCATGG 2789187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414437434159252