Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq223 293 2e-74 seq283 167 2e-36 seq12 167 2e-36 seq11 113 4e-20 seq17 87.8 1e-12 >seq223 Length=2232465 Score = 293 bits (324), Expect = 2e-74 Identities = 460/664 (69%), Gaps = 2/664 (0%) Strand=Plus/Minus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671 ||||| ||||| || || |||| ||||||||| ||||||| |||||||| | ||||| Sbjct 1613053 GGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATCTTCAGCGGCTCCACGTGATTCAGGTAA 1612994 Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731 | || |||||||||| || || ||||| || || || | || || |||| ||| | Sbjct 1612993 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGACCAGTGATGTGCGTG 1612934 Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791 ||| |||||||||| || ||||||||||| ||||| || ||||| || || ||| |||| Sbjct 1612933 ATCTTGTACGTGAGCAGGGAGTAGCTGGCAATGTTGAACGGCACACCCAGGCCCGTGTCT 1612874 Query 29792 CCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 29851 |||||| |||||| ||||||| | || || |||| |||||| ||||| || | | Sbjct 1612873 CCTGACTGCTGGTACAGCTGGC-GGTCAGTTCACCGTTCACCACGTAGAACTGGCAGAAG 1612815 Query 29852 GCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATG 29911 |||||||||||||| || | ||| ||| | ||||| |||||||| |||| || |||| Sbjct 1612814 GCATGGCACGGAGGTAGTGTCATCAGAGGAAGATCTTTTGGGTTCCAAGCACGCATGATG 1612755 Query 29912 ATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACC 29971 || | ||||| || |||||| | ||||| || | | || |||| || | || Sbjct 1612754 ATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCAATCACTTTCTGCAATTGGT-AACT 1612696 Query 29972 CCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGG 30031 || || || || |||| | ||||||||||||||| Sbjct 1612695 CCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGG 1612636 Query 30032 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 30091 || || || || | || | ||| || ||||| || | || ||| | |||||| Sbjct 1612635 AAGCCATAAACTAGGCCAAAGTCACCTTCTTCTCTTTTGGATAATCCCAGGCTATCCAAA 1612576 Query 30092 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30151 ||||||| | || ||||| |||||||| || || || || || |||||||| | Sbjct 1612575 AAGTCTCGGTGTCCATTGGCATCCCAGATTTTCACTCCTTTGGAAGATAGCTCTTTAGCT 1612516 Query 30152 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30211 |||||||| || ||| |||||||||| |||||||| || ||||||| || || | Sbjct 1612515 TTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACACAT 1612456 Query 30212 TTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATG 30271 ||||| || || || ||||| | | || ||| ||| | ||||| ||||||| Sbjct 1612455 TTGGTTGTCAGCAGTGGAAATTCATCTTTCCGGCTGTAGCGGGCCTGCATGCCAAACACC 1612396 Query 30272 GACA 30275 |||| Sbjct 1612395 GACA 1612392 >seq283 Length=1095284 Score = 167 bits (184), Expect = 2e-36 Identities = 233/323 (72%), Gaps = 3/323 (1%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 || |||||| ||| | || |||| |||||||| |||| || || | ||| | |||| Sbjct 231029 TGAGAAAGG-TCTTAGTTCTCTCTGACGCTGAATCTTCAGTGGCTCAATGTGATTCAGGT 231087 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | | |||||||||| || || ||||| || || || | || ||||||||||| | Sbjct 231088 AAATATATGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGACCGGTGACGTGTG 231147 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 ||||| || ||||| || |||| ||||| ||||| || |||| || || || |||| Sbjct 231148 AGATCATATAGGTGAGCAGGGAGTGACTGGCCATGTTGAATGGCAAGCCCAGGCCTATGT 231207 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGCTCACGTAAAACTGACAC 29848 | |||||| |||||| ||||| || || ||||| || ||| | | | | ||||| || Sbjct 231208 CTCCTGACTGCTGGTACAGCTGACAGGATAGCTCACCAGTCAC-CCTGAAGAACTGGCAA 231266 Query 29849 ATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACG 29908 | |||||| ||| ||| || ||||| ||| | ||||| |||||||| ||||| | Sbjct 231267 AGGGCATGATACGAAGGCAGCGCCATCAGAGGTACATCTTTTGGGTTCCAAGCACATGTG 231326 Query 29909 ATGATGCGCCTGTCTTCTGGGTT 29931 ||||| | |||| || ||||| Sbjct 231327 ATGATTCTTCTGTTGTCAGGGTT 231349 >seq12 Length=32490354 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || ||||||||||||||||| || ||| Sbjct 30593165 AGACCAGTGATGTGCGCGATCATGTACGTGAGCAGGGAGTAGCTGGCGATGTTGAACGGC 30593106 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| ||||||| |||||| |||||||| || ||||| |||| | Sbjct 30593105 ACACCCAGACCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 30593046 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||||||||| || ||||| ||| Sbjct 30593045 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGTAGTGCCATCAGA 30593001 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||||| || | ||| Sbjct 30589917 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCACCTTCTTCTCTTTTGGAGAAT 30589858 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| | ||||||||||||| ||| || ||||| |||||||| || || ||||| Sbjct 30589857 CCCAGGCTATCCAAAAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 30589798 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | |||||| || || Sbjct 30589797 GATAGTTCTTTAGCGTTTGTCGATCC 30589772 >seq11 Length=36342412 Score = 113 bits (124), Expect = 4e-20 Identities = 159/221 (72%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 114281 TCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCG 114340 || || || || || ||||| |||| |||| ||||| | | ||||| |||||| || Sbjct 15735026 TCCTTGAGTTCTCTACTGAGAACTATATTTATTCTGTCCTTTAAAGGTCGATTCTTCTCA 15734967 Query 114341 GGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTGTCGGAA 114400 || ||||||||||| ||||| |||||||| ||||||| ||||| |||||| | ||| Sbjct 15734966 GGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAA 15734907 Query 114401 GACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGATGCCAC 114460 || || | ||||| | |||| | || || || || | ||| || |||| Sbjct 15734906 GAGGTTGTGGTCATTCTTTGAAAATAGTTGAATTCATTCCTGAGT------GGGGGCCAG 15734853 Query 114461 GGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499 |||||||| || || || ||||||||| || ||| |||||| Sbjct 15734852 GGCAGATCCCCATTCTTGCCGATGCCCCTGTTCTGGGACAC 15734812 >seq17 Length=29863360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 14683140 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 14683199 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 14683200 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 14683247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406124623761598