Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq24 250 3e-61
seq2 102 8e-17
>seq24
Length=155392059
Score = 250 bits (276), Expect = 3e-61
Identities = 592/884 (67%), Gaps = 18/884 (2%)
Strand=Plus/Plus
Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720
|| || ||||| || || || |||| || | | || || |||||||| || |
Sbjct 44583478 ACCACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC----- 44583532
Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACC 16778
|| || ||||||||| | || ||||| || | || ||||| || | | |
Sbjct 44583533 AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA--AAC 44583590
Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838
||||||| || | ||| || || ||||| || || ||||| ||||| ||| |
Sbjct 44583591 CCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 44583650
Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898
|||| || || || || || | || || || | ||| ||| ||||| ||| |
Sbjct 44583651 TCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAG 44583710
Query 16899 CTTCCTTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957
| | |||| || || || || ||||| || ||| | ||| || ||||| |||
Sbjct 44583711 CATTGATAATTATTTCTCTCA-CTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAAC 44583769
Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017
|||| || || ||||| || ||||| ||||| |||||||| |||||||| || |||||
Sbjct 44583770 ATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 44583829
Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077
|| | || |||||| |||||||||||| | ||| ||||||| || || || ||||||
Sbjct 44583830 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 44583889
Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137
||||| || || || || | || || || | | ||||| | || || || ||||||
Sbjct 44583890 AAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTG 44583949
Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197
| | |||||| | |||| || || | ||| | ||| ||||| ||| |||
Sbjct 44583950 TCCCCAATCCAGCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCG-TTCAATG 44584008
Query 17198 GCCTT--AAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGG 17254
|| || | | || ||| ||||| || | || || | || || || || || || ||
Sbjct 44584009 GCATTGAAGAGAAATTC-CTTTT--CTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGA 44584065
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314
|| |||||||| || |||||||| |||||||| || || || || || || || ||||||
Sbjct 44584066 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCT 44584125
Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
|| | || |||||| | ||||| ||| | | |||||| || || ||||| ||
Sbjct 44584126 TCTGTAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCA 44584185
Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434
|| || || || || ||| | ||| || |||||| | || || || | |
Sbjct 44584186 CTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGAT 44584245
Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494
||||| | | || ||||| | ||||| || |||| |||||| || |||| |
Sbjct 44584246 TCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCC 44584305
Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
||||| |||||||| | ||| ||||||| ||| | | ||||||
Sbjct 44584306 GCCTTCTTATACATCTGCCAGATATCATGGTACTCGACGGGGAA 44584349
Score = 136 bits (150), Expect = 4e-27
Identities = 376/570 (66%), Gaps = 11/570 (2%)
Strand=Plus/Minus
Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018
|||| || || || | || ||||| ||||| || ||||| |||||||| || |||||||
Sbjct 143818027 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 143817968
Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078
| | || |||||| |||| ||||||| | ||| |||||| || || || |||||||
Sbjct 143817967 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAA 143817908
Query 17079 AGAATATACCCTCGACGGATGCAAACGC--GAT--TAATCGTTCGGCGTACGTCGCGTCT 17134
|||| | | || || | ||||| || || | ||||| | | || |||||
Sbjct 143817907 AGAAGGTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCT 143817848
Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194
||||| | |||||| | ||||| | || || | ||| | | | |||||||||
Sbjct 143817847 TTGTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCA 143817789
Query 17195 ATGGC-CTTAA-ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252
||||| || || | || ||| |||| | | | | || ||| || || || || |
Sbjct 143817788 ATGGCACTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATATGTGTCAATAAGGA 143817733
Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312
| | | ||||| || |||||||| || || || || || || || || ||||| ||
Sbjct 143817732 GATTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGG 143817673
Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372
||| | || ||||||| ||| ||||| | | ||||| | | || || |
Sbjct 143817672 TTTCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCAT 143817613
Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432
| | || || || || |||| ||||| || |||||| ||| || || | ||
Sbjct 143817612 CACATGCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 143817553
Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492
| ||||| | | || ||||| | ||||| || | || |||| ||| | ||
Sbjct 143817552 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCT 143817493
Query 17493 CTGCCTTTTTATACATATTCCAAATATCAT 17522
|| | || || ||||| |||||||||||||
Sbjct 143817492 CTACTTTCTTTTACATTTTCCAAATATCAT 143817463
>seq2
Length=114371477
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| |||||||| |||||||| ||||||||||| | || |||||| |||||||||||
Sbjct 10280454 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10280395
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||||| || || || || |||||||| || || || || | ||||| |
Sbjct 10280394 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10280335
Query 17106 C 17106
|
Sbjct 10280334 C 10280334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517479134206320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |