Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq24 250 3e-61 seq2 102 8e-17 >seq24 Length=155392059 Score = 250 bits (276), Expect = 3e-61 Identities = 592/884 (67%), Gaps = 18/884 (2%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || |||| || | | || || |||||||| || | Sbjct 44583478 ACCACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC----- 44583532 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACC 16778 || || ||||||||| | || ||||| || | || ||||| || | | | Sbjct 44583533 AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA--AAC 44583590 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| || | ||| || || ||||| || || ||||| ||||| ||| | Sbjct 44583591 CCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 44583650 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || || || || | || || || | ||| ||| ||||| ||| | Sbjct 44583651 TCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAG 44583710 Query 16899 CTTCCTTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 | | |||| || || || || ||||| || ||| | ||| || ||||| ||| Sbjct 44583711 CATTGATAATTATTTCTCTCA-CTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAAC 44583769 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 |||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||| Sbjct 44583770 ATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 44583829 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || | || |||||| |||||||||||| | ||| ||||||| || || || |||||| Sbjct 44583830 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 44583889 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| || || || || | || || || | | ||||| | || || || |||||| Sbjct 44583890 AAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTG 44583949 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | | |||||| | |||| || || | ||| | ||| ||||| ||| ||| Sbjct 44583950 TCCCCAATCCAGCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCG-TTCAATG 44584008 Query 17198 GCCTT--AAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGG 17254 || || | | || ||| ||||| || | || || | || || || || || || || Sbjct 44584009 GCATTGAAGAGAAATTC-CTTTT--CTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGA 44584065 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 || |||||||| || |||||||| |||||||| || || || || || || || |||||| Sbjct 44584066 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCT 44584125 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | || |||||| | ||||| ||| | | |||||| || || ||||| || Sbjct 44584126 TCTGTAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCA 44584185 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || || ||| | ||| || |||||| | || || || | | Sbjct 44584186 CTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGAT 44584245 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | ||||| || |||| |||||| || |||| | Sbjct 44584246 TCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCC 44584305 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| |||||||| | ||| ||||||| ||| | | |||||| Sbjct 44584306 GCCTTCTTATACATCTGCCAGATATCATGGTACTCGACGGGGAA 44584349 Score = 136 bits (150), Expect = 4e-27 Identities = 376/570 (66%), Gaps = 11/570 (2%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 143818027 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 143817968 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||||| | ||| |||||| || || || ||||||| Sbjct 143817967 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAA 143817908 Query 17079 AGAATATACCCTCGACGGATGCAAACGC--GAT--TAATCGTTCGGCGTACGTCGCGTCT 17134 |||| | | || || | ||||| || || | ||||| | | || ||||| Sbjct 143817907 AGAAGGTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCT 143817848 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| | |||||| | ||||| | || || | ||| | | | ||||||||| Sbjct 143817847 TTGTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCA 143817789 Query 17195 ATGGC-CTTAA-ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 ||||| || || | || ||| |||| | | | | || ||| || || || || | Sbjct 143817788 ATGGCACTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATATGTGTCAATAAGGA 143817733 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | | | ||||| || |||||||| || || || || || || || || ||||| || Sbjct 143817732 GATTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGG 143817673 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 ||| | || ||||||| ||| ||||| | | ||||| | | || || | Sbjct 143817672 TTTCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCAT 143817613 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | | || || || || |||| ||||| || |||||| ||| || || | || Sbjct 143817612 CACATGCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 143817553 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 | ||||| | | || ||||| | ||||| || | || |||| ||| | || Sbjct 143817552 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCT 143817493 Query 17493 CTGCCTTTTTATACATATTCCAAATATCAT 17522 || | || || ||||| ||||||||||||| Sbjct 143817492 CTACTTTCTTTTACATTTTCCAAATATCAT 143817463 >seq2 Length=114371477 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||| | || |||||| ||||||||||| Sbjct 10280454 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10280395 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 10280394 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10280335 Query 17106 C 17106 | Sbjct 10280334 C 10280334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517479134206320