Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq24 239 5e-58
seq9 98.7 1e-15
seq2 93.3 4e-14
>seq24
Length=155392059
Score = 239 bits (264), Expect = 5e-58
Identities = 589/885 (67%), Gaps = 14/885 (2%)
Strand=Plus/Plus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|| ||||| || || || || | || | | || ||||||||||| |||| |
Sbjct 44583481 ACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT----- 44583535
Query 15962 GATATATTTTCCATAAAATCAAA-GGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020
|| ||||| ||| |||| ||||| ||| | || || || | ||| | |||||
Sbjct 44583536 GAAATATTCTCCGTAAAGTCAAATGGGCTCTCTA-CTCCGAAAACCTTGCTAAAACCCAG 44583594
Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTAA 16079
|||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| |
Sbjct 44583595 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTCA 44583653
Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139
| || || || || || | || | || | |||| |||||||||| ||| || |
Sbjct 44583654 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 44583713
Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199
|||| || || | || || || ||| | || |||||||| ||||| |
Sbjct 44583714 TGATAATTATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCA 44583773
Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259
|| || || || || |||| || || |||||||| |||||||| |||||||| || |
Sbjct 44583774 AGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGA 44583833
Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319
|| ||||| |||||||||||| | ||||||||||| ||||| || || |||||||
Sbjct 44583834 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 44583893
Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379
| || || || || | || || || | | ||||| | || ||||| ||||| | |
Sbjct 44583894 AGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCC 44583953
Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439
|||||| | |||| || || | || | |||| ||||| ||| ||||| |
Sbjct 44583954 CAATCCAGCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCG-TTCAATGGCAT 44584012
Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499
| || | || ||||| | ||| | || || || ||||| || | ||| ||||
Sbjct 44584013 TGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACA 44584072
Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559
|||| || |||||||| || ||||| || || || |||||||| || || || || | |
Sbjct 44584073 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAA 44584132
Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619
| || ||| | |||||| ||| ||| || ||||| || || || |||||||| |
Sbjct 44584133 TCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTG 44584192
Query 16620 CAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677
||| ||||| || ||| | | || |||||| | || || | | | | |||
Sbjct 44584193 CAAAGAAAACCAGAACATGGGAT--ATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCA 44584250
Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737
| | || ||||| | ||||| || || | ||||| ||| |||| | |||||
Sbjct 44584251 GTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTT 44584310
Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
|||||||| | ||| ||||||| ||| | | ||| || | |||
Sbjct 44584311 CTTATACATCTGCCAGATATCATGGTACTCGACGGGGAAGATGAC 44584355
Score = 149 bits (164), Expect = 6e-31
Identities = 382/570 (67%), Gaps = 15/570 (3%)
Strand=Plus/Minus
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
|| || || |||| || |||| || || || ||||| |||||||| |||||||| ||
Sbjct 143818025 AGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTG 143817966
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318
| || ||||| |||| ||||||| | |||||||||| ||||| || || ||||||
Sbjct 143817965 AGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAG 143817906
Query 16319 AATATACCCTCAACAGATGCAAAAGCG--ATTAATC--GTTCCGCGTACGTAGCATCTTT 16374
|| | | || || | ||||| || || | | |||| | | ||| | |||||
Sbjct 143817905 AAGGTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTT 143817846
Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434
|| | |||||| | ||||| | || || | || | ||| | |||||||| ||
Sbjct 143817845 GTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAAT 143817787
Query 16435 GGC-CTTAA-ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492
||| || || | || ||| |||| | || |||| | |||| || ||||| || | |
Sbjct 143817786 GGCACTGAAGAGAAATTCCCTTTCTT-TGT-TATCTTTAATAT--GTGTCAATAAGGAGA 143817731
Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552
| | ||||| || |||||||| ||||| || || || || ||||||||||| |
Sbjct 143817730 TTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTT 143817671
Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612
|| | || | ||||| |||| ||||| ||| ||| |||| | || || |||
Sbjct 143817670 TCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCA 143817611
Query 16613 CTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAA 16670
| ||| ||||| || ||| |||||| | | || |||||| ||| |||| | ||
Sbjct 143817610 CATGCTGCAAATAAAGCCAGAATATGGGAT--ATAAAATATCTTTACTCAGGCTTCAGGG 143817553
Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730
| ||| | | || ||||| | ||||| || | | | |||| || | ||
Sbjct 143817552 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCT 143817493
Query 16731 CTGCCTTTTTATACATTTTCCAAATATCAT 16760
|| | || || |||||||||||||||||||
Sbjct 143817492 CTACTTTCTTTTACATTTTCCAAATATCAT 143817463
>seq9
Length=144709823
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| || || ||||||||||| | |||||||| |||| ||||
Sbjct 101030341 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 101030400
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| | || || |||| ||||| |
Sbjct 101030401 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 101030460
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 101030461 CCACCACTCTTTCC 101030474
>seq2
Length=114371477
Score = 93.3 bits (102), Expect = 4e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| || ||||| || | || ||||| ||||||||||||
Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||||| ||||| || || |||||||| || || || || | ||||| ||
Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 10280334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511348721605680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |