Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq24 239 5e-58 seq9 98.7 1e-15 seq2 93.3 4e-14 >seq24 Length=155392059 Score = 239 bits (264), Expect = 5e-58 Identities = 589/885 (67%), Gaps = 14/885 (2%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | | || ||||||||||| |||| | Sbjct 44583481 ACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT----- 44583535 Query 15962 GATATATTTTCCATAAAATCAAA-GGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 || ||||| ||| |||| ||||| ||| | || || || | ||| | ||||| Sbjct 44583536 GAAATATTCTCCGTAAAGTCAAATGGGCTCTCTA-CTCCGAAAACCTTGCTAAAACCCAG 44583594 Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTAA 16079 |||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| | Sbjct 44583595 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTCA 44583653 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || || || || | || | || | |||| |||||||||| ||| || | Sbjct 44583654 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 44583713 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 |||| || || | || || || ||| | || |||||||| ||||| | Sbjct 44583714 TGATAATTATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCA 44583773 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 || || || || || |||| || || |||||||| |||||||| |||||||| || | Sbjct 44583774 AGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGA 44583833 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 || ||||| |||||||||||| | ||||||||||| ||||| || || ||||||| Sbjct 44583834 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 44583893 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || || | || || || | | ||||| | || ||||| ||||| | | Sbjct 44583894 AGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCC 44583953 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||| | |||| || || | || | |||| ||||| ||| ||||| | Sbjct 44583954 CAATCCAGCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCG-TTCAATGGCAT 44584012 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 | || | || ||||| | ||| | || || || ||||| || | ||| |||| Sbjct 44584013 TGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACA 44584072 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| || |||||||| || ||||| || || || |||||||| || || || || | | Sbjct 44584073 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAA 44584132 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 | || ||| | |||||| ||| ||| || ||||| || || || |||||||| | Sbjct 44584133 TCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTG 44584192 Query 16620 CAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 ||| ||||| || ||| | | || |||||| | || || | | | | ||| Sbjct 44584193 CAAAGAAAACCAGAACATGGGAT--ATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCA 44584250 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 | | || ||||| | ||||| || || | ||||| ||| |||| | ||||| Sbjct 44584251 GTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTT 44584310 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||||||| | ||| ||||||| ||| | | ||| || | ||| Sbjct 44584311 CTTATACATCTGCCAGATATCATGGTACTCGACGGGGAAGATGAC 44584355 Score = 149 bits (164), Expect = 6e-31 Identities = 382/570 (67%), Gaps = 15/570 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||| || |||| || || || ||||| |||||||| |||||||| || Sbjct 143818025 AGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTG 143817966 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||| ||||||| | |||||||||| ||||| || || |||||| Sbjct 143817965 AGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAG 143817906 Query 16319 AATATACCCTCAACAGATGCAAAAGCG--ATTAATC--GTTCCGCGTACGTAGCATCTTT 16374 || | | || || | ||||| || || | | |||| | | ||| | ||||| Sbjct 143817905 AAGGTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTT 143817846 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || | |||||| | ||||| | || || | || | ||| | |||||||| || Sbjct 143817845 GTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAAT 143817787 Query 16435 GGC-CTTAA-ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 ||| || || | || ||| |||| | || |||| | |||| || ||||| || | | Sbjct 143817786 GGCACTGAAGAGAAATTCCCTTTCTT-TGT-TATCTTTAATAT--GTGTCAATAAGGAGA 143817731 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 | | ||||| || |||||||| ||||| || || || || ||||||||||| | Sbjct 143817730 TTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTT 143817671 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 || | || | ||||| |||| ||||| ||| ||| |||| | || || ||| Sbjct 143817670 TCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCA 143817611 Query 16613 CTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAA 16670 | ||| ||||| || ||| |||||| | | || |||||| ||| |||| | || Sbjct 143817610 CATGCTGCAAATAAAGCCAGAATATGGGAT--ATAAAATATCTTTACTCAGGCTTCAGGG 143817553 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 | ||| | | || ||||| | ||||| || | | | |||| || | || Sbjct 143817552 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCT 143817493 Query 16731 CTGCCTTTTTATACATTTTCCAAATATCAT 16760 || | || || ||||||||||||||||||| Sbjct 143817492 CTACTTTCTTTTACATTTTCCAAATATCAT 143817463 >seq9 Length=144709823 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| || || ||||||||||| | |||||||| |||| |||| Sbjct 101030341 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 101030400 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| ||||| | Sbjct 101030401 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 101030460 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 101030461 CCACCACTCTTTCC 101030474 >seq2 Length=114371477 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || ||||| || | || ||||| |||||||||||| Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 10280334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511348721605680