Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq17 104 2e-17 seq7 95.1 1e-14 >seq17 Length=90481686 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 60460178 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 60460119 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 60460118 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 60460059 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||||| |||||||| ||||| || ||||||||| ||| || | || ||| Sbjct 60460058 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 60459999 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 60459998 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 60459964 >seq7 Length=173848474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | | || || ||||| ||| ||| | |||||| Sbjct 115442744 AAAATGCAGATTTTCGTGAAAACCCTTATGGAGAAGACCATCACCCTCGAGGCTGAACCC 115442803 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 115442804 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 115442863 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| || || |||||||||||| ||| || | || ||| Sbjct 115442864 CAGCAAAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 115442923 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 | |||||| ||||| ||||||||||| | ||||| Sbjct 115442924 AGTATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 115442958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428282366175470