Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq24 486 2e-132 seq22 439 3e-118 seq4 320 2e-82 seq7 120 4e-22 >seq24 Length=155392059 Score = 486 bits (538), Expect = 2e-132 Identities = 460/587 (78%), Gaps = 0/587 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||| | ||||| |||||||||| || Sbjct 13275212 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTCGAAGCGGCGGCTGTACCTACGT 13275271 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| ||||||| ||||||| ||||||||| ||||||||||| || |||||||| Sbjct 13275272 AGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCGA 13275331 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 13275332 CACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATAAGCGCAGTGGCGTCGTCGCTG 13275391 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||| ||||| | || |||| ||||||| ||| Sbjct 13275392 GGGGCTGGCAGGGCCTCCCGCAGGAAGGCAAAGAGAGTGTGCGCCCCCACACCGTTCACC 13275451 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||| ||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 13275452 TCGCCCTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 13275511 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| || ||||| | |||| |||||| ||||| || || |||||||| |||||| Sbjct 13275512 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGG 13275571 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || |||||||| ||||| ||||| | ||| ||| |||||||||||||||||||||| ||| Sbjct 13275572 AAGCCAAGCACCACCAGGCCCCGGGGTCCGAGGTGCCGCTGCAGCTCGTTCATCTGGGTG 13275631 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || |||||||| ||| | |||||||||||||| || ||||| || || | ||| | || Sbjct 13275632 TAGTCCCGGACTGTGGTGCCTCAGAGGGACGCCACATTCTCTATAAGTAGTACCTTGACC 13275691 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| | ||||||||| || || ||| | |||||| || |||||||| ||| Sbjct 13275692 CGCAGGGAGCCCAGGCTCACAGGCTCCCCGACGGCCAGCGGGCGCGCCGAGAAGGCATAC 13275751 Query 83597 ACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643 || || || | | ||||| || || | || || ||| |||| || Sbjct 13275752 ACCGACTGGGCCGCCGCCGCCGCTGGCCGAGCAGCATACATGGCGCA 13275798 >seq22 Length=46275980 Score = 439 bits (486), Expect = 3e-118 Identities = 442/568 (78%), Gaps = 5/568 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| |||| ||||||| Sbjct 26963917 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTATACCTGCAT 26963976 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| |||||| ||||||| ||||||||| |||||||||||||| |||||||| Sbjct 26963977 ACAGGCACACCGTCAAGGCCCACCAGGAACTTCTCAAAGTTCCAGGCCACATCGTTGCGA 26964036 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 26964037 CACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCTCAGTGGCGTCGTCGCTG 26964096 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||| |||||| || || |||||| |||| || || |||| |||||||| ||| Sbjct 26964097 GGGGCTGGC-CGGCCTCCCGCAGAAAGGCGGAGAGAGGGTGCGCCCCCGCACCGTTCACC 26964155 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| |||||||| ||| | |||||||| || ||||| |||||| ||| Sbjct 26964156 TCGCACTTCTCCAAGAGCATGAAGCTGGGCTCGAACCCACCACCAGGTTGGACGTACTTG 26964215 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||||| || ||||| | |||| |||||| ||||| || || |||||||| |||||| Sbjct 26964216 AGGGATTTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGG 26964275 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || |||||||| ||||| ||||| | || |||||||||||||||||||||||||| ||| Sbjct 26964276 AAGCCAAGCACCACCAGGCCCCG-GGGCCGAGGCGCCGCTGCAGCTCGTTCATCTGGGTG 26964334 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 | |||||||||||| | |||||||||||||| || |||||||| || | || |||| Sbjct 26964335 TGGTCCCGGACCGTGGTGCCTCAGAGGGACGCCACATTCTCGATAAGTAGTCCCTTGCCC 26964394 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| || |||||| | || |||| | ||||| || || ||||| ||| Sbjct 26964395 CGCAGGGAGCC-CAGGGCACAGGCTGCCCGCCGGCCAGCGGGCACGCGGAAAAGGCTTAC 26964453 Query 83597 ACAGATCTGGTC-TCTGCCGCGGCAAGC 83623 || || |||| | | ||||| || ||| Sbjct 26964454 ACCGA-CTGGGCAGCCGCCGCCGCTAGC 26964480 >seq4 Length=205426864 Score = 320 bits (354), Expect = 2e-82 Identities = 273/337 (81%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 50360972 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 50361031 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| ||||||| ||||||| ||||||||| ||||||||||| || |||||||| Sbjct 50361032 AGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCGA 50361091 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 50361092 CACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATAAGCGCAGTGGCGTCGTCGCTG 50361151 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||||||||| || || |||| |||||||| ||| Sbjct 50361152 GGAGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCGCACCGTTCACC 50361211 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 50361212 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGCCGGACGTACTTG 50361271 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| |||||| |||| Sbjct 50361272 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 50361308 Score = 223 bits (246), Expect = 4e-53 Identities = 201/253 (79%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| |||| Sbjct 50361580 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGTCCGAGGC 50361639 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 50361640 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 50361699 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 |||||||||| || | ||| |||||| | | |||| | ||||||||| || || |||| Sbjct 50361700 CGTTCTCGATAAGTAGTACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGG 50361759 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | |||||| || |||||||| ||||| || || | | ||||| || ||| | || | Sbjct 50361760 CCAGCGGGCGCGCCGAGAAGGCATACACCGACTGGGCCGCCGCCGCCGCTAGCCGAGCAG 50361819 Query 83631 CGTACTTGGCACA 83643 | || |||| || Sbjct 50361820 CACACATGGCGCA 50361832 >seq7 Length=173848474 Score = 120 bits (132), Expect = 4e-22 Identities = 206/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| || |||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 108746806 GCAGCTACGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 108746748 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 108746747 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 108746688 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | | |||| ||||| Sbjct 108746687 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCTCCCGCATCAAGCTCATCCGCCACTAC 108746629 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| |||| ||||| ||||| ||||| |||| | ||||| | Sbjct 108746628 GTGCAGCTGCTCTACCCA----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 108746573 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 108746572 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAAAGGCGC 108746524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608718615270960