Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_001826.2 Length=119451 Score E Sequences producing significant alignments: (Bits) Value seq2750 161 8e-35 >seq2750 Length=44035 Score = 161 bits (178), Expect = 8e-35 Identities = 207/283 (73%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 47248 ATACAGGCGATAGCAAGGGCAGGCAGTGATTGCGCTC-TGTTTGTTGAAGTCTTCCATAT 47306 || ||||||| |||| ||||| | || ||| || || ||| || |||| | ||| Sbjct 20655 ATGCAGGCGAAAGCAGGGGCACG-AGACCATGCTGTCCTGCATGTCAAAATCTTGCCTAT 20597 Query 47307 GTTCGCTACAGACATAGCTGACAACGTTCACCATCTTCTCATTGGCATCTTTGAGGTTAT 47366 | || ||| ||||| || || ||||||| || | ||| | || || || || |||| Sbjct 20596 GCTCCTGACACACATAACTTACCACGTTCAGCAGCCGCTCCTGAGCGTCCTTCAGCTTAT 20537 Query 47367 ACAAAAAACTTGTTGTCTTCTCTCCTGAATTTACAGAGGAGATAAAAAAGATCTTGGCAT 47426 | | ||| || || | || || | || ||||| || ||||| || | ||||||||| | Sbjct 20536 AAAGAAAGCTGGTGGCCTGGTCGGCCGAGTTTACGGACGAGATGAAGATGATCTTGGCGT 20477 Query 47427 CCTTCTGTAACATAAACCCCAAGATTGCTGGAAGTGCTTCCTTCTTTATGAAATTTGCTT 47486 ||||||| | |||||| |||| ||| || || || || |||||||| || || || || | Sbjct 20476 CCTTCTGAAGCATAAAGCCCAGGATCGCCGGCAGGGCCTCCTTCTTGATAAAGTTGGCCT 20417 Query 47487 CATCAACAAACAGTAGATTAAATGTCTGCCCCCGGATGCTCTG 47529 |||| ||||||| || | ||||||||||||||| |||||||| Sbjct 20416 CATCCACAAACAAGAGGTGAAATGTCTGCCCCCGAATGCTCTG 20374 Score = 140 bits (154), Expect = 2e-28 Identities = 224/322 (70%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 40339 TCTGCAGCAGAGGGACTTTTTAAAAGTTTTCACCTGCTGGTGGGTAAAAATGTTAGGGAA 40398 || || || ||||| || ||| | || ||| ||||||||||||| || ||| ||| || Sbjct 28447 TCAGCGGCCGAGGGGCTGTTTCACAGCTTTGACCTGCTGGTGGGCAAGGATGCTAGAGAG 28388 Query 40399 AACAGTGTCAGATTTGAGGCGCTCCTGGGAGTCTATACCAACGCTATAGAATTTGTCAAA 40458 | ||| ||||| | ||| || || ||||| || |||||||| ||| || Sbjct 28387 TCGGGCATCAAGTTTGAAGTGCTGCTTGGGGTCTACACGAACGCTATCCAATACGTGCGC 28328 Query 40459 TTTCTAGAGACCTCCTTGGCTATCGCCTGTCTCAATACTGAATTCAAGGATCTCAGGAGA 40518 ||||| ||||| | ||||| | ||||| | || || |||||||| || || || | Sbjct 28327 TTTCTGGAGACGGCACTGGCTGTGTCCTGTGTGAACACGGAATTCAAAGACCTGAGTCGT 28268 Query 40519 ATGGTAGAGGGAAAAATCCAATTCAAGGTCTCAGTGCCCACTATAGCGCACGGTGATGGA 40578 ||| || || || || ||||| | |||| || ||||| || || ||||| |||||| Sbjct 28267 ATGACGGATGGCAAGATTCAATTTAGAATCTCCGTCCCCACAATTGCTCACGGGGATGGA 28208 Query 40579 AGAAGACCAAGTAAACAAAGACAGTACCTTGTTATGAAATCTGCCCACAAACATCACATA 40638 || ||||| ||||| || | | | |||| | || | ||||||||| ||||| Sbjct 28207 AGGAGACCCAGTAAGCAGCGGACCTTCATTGTGGTCAAGAATTGCCACAAACACCACATC 28148 Query 40639 AGTGCAGAAATTGAGTTGTCCA 40660 ||| | ||||| ||| |||||| Sbjct 28147 AGTACGGAAATCGAGCTGTCCA 28126 Score = 114 bits (126), Expect = 1e-20 Identities = 219/321 (68%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 43297 GCCATGCACATGAAACTGTCACCCATGGGATTTATTCACATGACCAAGCTAAAGGTGCAC 43356 ||||||||||| || |||| ||| ||| | |||| | | ||||||| ||| | ||| Sbjct 25471 GCCATGCACATCAAGATGTCCCCCGTGGCCTATATTGCCCAGGCCAAGCTCAAGATCCAC 25412 Query 43357 CCCGGAGTTGCTCTAACAGTTGTGAGGACGGATGAGTTGCTTACTGAAAATATTCTGTAC 43416 ||||| || || | || || || ||||| |||||| | || | ||||| || ||| | Sbjct 25411 CCCGGGGTGGCAATGACCGTGGTCAGGACCGATGAGATCCTCTCCGAAAACATCTTGTTC 25352 Query 43417 AGCAACAGGGCATCAACCTCTGTGTTTATTGGAAGGCCAACTGTTAAGCGGCGAGAAATC 43476 || ||||| || ||||| |||| ||||| | || | || | || || || | Sbjct 25351 AGTTCTAGGGCCTCTACCTCCATGTTCATTGGGACCCCCAACGTCAGCCGCCGGGAGGCC 25292 Query 43477 CGTGCAGATGCTGTGGGATTTGATGTAAGCA--ATGAAATAGCCTCTTTAGATACTGCCA 43534 | | || || ||| ||||| || ||| | ||||| ||||| | || |||| Sbjct 25291 AGGGTGGACGCGGTGACCTTTGAGGT--GCATCACGAAATGGCCTCCATCGACACTGGGC 25234 Query 43535 TGGGGTACAGCTCAACTCTGATTCCTGCTAGAGTTGCTGGAATTACTACAGACATGGGAA 43594 | | || || || || ||| || || || || |||| || |||||||||||||||| Sbjct 25233 TCAGCTATAGTTCGACCATGACCCCGGCCAGGGTGGCTGCCATCACTACAGACATGGGAA 25174 Query 43595 TCCACTGTCAGGACTTGTTTA 43615 ||||| || ||||| |||| Sbjct 25173 TCCACACCCAAGACTTCTTTA 25153 Score = 98.7 bits (108), Expect = 8e-16 Identities = 397/616 (64%), Gaps = 16/616 (3%) Strand=Plus/Minus Query 43768 CATGGTCAATTGGCCACCTGTGAGGTGATTCTAACACCTGTCACATCAGACCTTACATAC 43827 ||||| || ||||||||||||| | || | || || ||||| ||||| | | || Sbjct 25003 CATGGCCAGCAGGCCACCTGTGAGATTATCGTGACCCCGGTCACGGCAGACGTGGCCTAT 24944 Query 43828 TTTCA---GTCCCCTAACAGCCCCAGAGGACGAACAGGATGTGTGGTTTCATGTGACACG 43884 ||||| |||| ||| ||| ||||| || | | || ||||| || ||||| | Sbjct 24943 TTTCAAAAGTCC---AACTCCCCAAGAGGGCGTGCTGCCTGCGTGGTCTCCTGTGAAAAC 24887 Query 43885 TATTCACCAGAAAATGCAGCAAAG---CTTTTGTATGATCACGGTCAGCCTGACCCAGCC 43941 || | ||| | || || || || | ||||| || | || || | ||| Sbjct 24886 TACA-ATCAGGAG--GCCGCCGAGGGGCTCATCTATGACCATTCCCGTCCGGATGCCGCC 24830 Query 43942 TATGAATTCAGGACCACAAATAACCCCTGGGCTTCCCAGATTGGATCACTGGGCGATGCA 44001 || || | | ||| ||| ||||||||||| || ||| | || || ||||| || Sbjct 24829 TACGAGTACCGGAGCACCGTGAACCCCTGGGCCTCTCAGCTGGGTTCCCTGGGTGACATT 24770 Query 44002 CTGTACAA-TAATCACAATAGACAGCTTGTGACACCCGGTCTTTACAGTCCCTGTAGACA 44060 ||||||| | || | || | ||| | || || || ||||| || || || Sbjct 24769 ATGTACAACTCCTC-CTATCGCCAGACGGCCGTCCCGGGCCTCTACAGCCCTTGCCGAGC 24711 Query 44061 ATTTTTTAACAAGGACATGTTGCTGAAAAACAATAAATCCCTGTTCACTCTGATACATGA 44120 |||||| |||||||| | ||||| ||||| | || | || || | | || Sbjct 24710 ATTTTTCAACAAGGAGGAGCTGCTGCGCAACAACAGGGGGCTCTACAACATGGTCAACGA 24651 Query 44121 ATATATTACCCGCCTTGGAGGTTCCCCCGCCACCAGCAACACAGATGTTCAGTATGTTGT 44180 || | ||||| || || ||| || ||||||||||| || || |||| ||| || Sbjct 24650 GTACAGCCAGCGCCTGGGTGGGCACCCGGCGACCAGCAACACCGAGGTGCAGTTTGTGGT 24591 Query 44181 AATTAATGGCACTGATGTTTTCTTGGAGCAACCATGTATGCTGTTACAAGAAGCCTACCC 44240 || || ||||| || ||| ||||||||||||| | | | || || || | ||| Sbjct 24590 GATCGCGGGGACTGACGTGTTCCTGGAGCAACCATGCAGCTTCCTTCAGGAGGCGTTCCC 24531 Query 44241 AACATTGTCTG-CTAGTCACAAGGGTCTCCTGGACGAGTTCATGTCAAACAAGAAGGGGC 44299 || | || | || || || || ||| | || ||||| ||||| ||| || | Sbjct 24530 CGCACTCTCGGCCTCCTC-CAGGGCACTCATCGATGAGTTTATGTCTGTCAAACAGACCC 24472 Query 44300 ATGCTCCTGTACATAATATGCACTATCTAGTAGAAGAAGTGGCTCCCCTGAAAAGAGTAT 44359 | || || || ||| || |||||| || | ||||| ||||| || || |||| ||| Sbjct 24471 ACGCCCCCGTCCATTATGGACACTATATAATTGAAGAGGTGGCGCCGGTGCGAAGAATAT 24412 Query 44360 TAAAGATTGGCAACAA 44375 ||||| |||| || || Sbjct 24411 TAAAGTTTGGAAATAA 24396 Score = 84.2 bits (92), Expect = 2e-11 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 38576 CCGTGGATCTTGGAGACGGTGGCGGTGGCGGCCTTAAACCAGGAAATGTTGTACCCGCGC 38635 ||||| | | ||||| ||||||||| |||||||| |||||||| | ||| ||| | Sbjct 30226 CCGTGCACCCGGGAGATGGTGGCGGTTGCGGCCTTGAACCAGGACACGTTCAGGCCGTTC 30167 Query 38636 TTGGTAGAGACCGCTGATGGGAAGTTGGTGGTCCAAAACACATCATGCCTGCCAGTTCTG 38695 | || ||| | || || |||||||| |||||||| || | |||| |||| Sbjct 30166 TGACAGGACACCACGGAGGGAAAGTTGGTAGTCCAAAAGACCCCGCTCCTGTTCTCTCTG 30107 Query 38696 ACAAT-CTCTTGATTTTCTAGTCCCTGAAGATCAAAGGTTGAGTTCCAGTTGGATATCAG 38754 || | |||| ||||||| || || || ||||| | || ||||||||||| || | Sbjct 30106 ACTAGGCTCT-GATTTTCCAGGCCATGGAGATCCAGCGTCGAGTTCCAGTTCGACACGGC 30048 Query 38755 GACAGGATTTATAGTTTTGATGGGCATGAAGCATTTTAGGCAGCCCATAGCAAAGAGGAA 38814 | |||| |||| | | |||| |||||| || | ||| || || ||||| Sbjct 30047 CGCGGGATAAATAGCCTCCACCGGCAGGAAGCACCGCAGTGACGTCATGGCCAATAGGAA 29988 Query 38815 G-TGTATTAGTGTACCACTGATGTTGATGTTGATGGC 38850 | | ||| || || |||||||||| |||||||| Sbjct 29987 GCTCAGATAG-GTGCCGCTGATGTTGACATTGATGGC 29952 Score = 82.4 bits (90), Expect = 6e-11 Identities = 229/338 (68%), Gaps = 20/338 (6%) Strand=Plus/Minus Query 64469 CCCCACAGCATAAAAACACAC--TTATCATTCTTTTCAGAGATTGTAGAAATGACATAGT 64526 |||||||||||||| || ||| || | | | ||||||| || || || | || Sbjct 2226 CCCCACAGCATAAACACGCACGCTTTTAA--CCGCTCAGAGAGCAATGAGATTACGTGGT 2169 Query 64527 CTGTGAACCATCCCCATCCAAGTTTGTG-GTGAGAACCAGGCCGTCCCTTATCTACAGTC 64585 | || ||||| |||| |||| | | || ||| || || ||| ||||| | |||||| Sbjct 2168 CAGTAAACCACGCCCAGCCAA-TGTCTGCGTGTGAGCCGGGCTTGCCCTTTTGCACAGTC 2110 Query 64586 AGGATGCAGTTAAGCAGAAGAACTCCCTGTTCTGCCCACTTATCAAGACAGCC---AGAA 64642 |||||| ||| || || | |||||||| |||||| || |||||||| | Sbjct 2109 AGGATGGTGTTGAGTAGCAACACTCCCTGGGAGGCCCACGCGTCCAGACAGCCGTGATCC 2050 Query 64643 GGGGGAATTTGA-AAATCAGGCACTGAC-CT-TTTAAGTTCTTGGAAAATGTTGTGTAAG 64699 |||||| || || || |||| ||| || | ||||||| | | ||||| | | Sbjct 2049 GGGGGA----GAGAACTCCGGCA--GACTCTGATGAAGTTCTGTGTAGATGTTCCTCAGG 1996 Query 64700 CTCGGTGGGACTGGAAAGTTTTCATG-AACACTAAAGGCCAAACCATTGGCCTGGCCCCC 64758 || || || | ||| ||| | ||| || || || |||| || || || || || || Sbjct 1995 CTGGGGGGAATTGGGAAGCCGT-ATGCCACGCTGAATGCCAGGCCGTTTGCTTGACCTCC 1937 Query 64759 ATGATAGGGATCCTGTCCCAGAATAACAACCCTAACAT 64796 |||||||| ||||| |||| |||||| ||| ||| || Sbjct 1936 GTGATAGGGGTCCTGGCCCAAAATAACCACCTTAATAT 1899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 382070553283368