Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq13 122 7e-23
seq2 122 7e-23
seq3 107 2e-18
seq9 98.7 8e-16
seq17 89.7 4e-13
seq1 89.7 4e-13
>seq13
Length=135337776
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| ||||||||| || || ||||| ||||| | |||||| | | ||
Sbjct 126789318 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 126789377
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
||||||||||| || ||| | || | ||||||||||| || | ||||||||||||
Sbjct 126789378 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 126789437
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||||| ||| || | ||| || |||| |||||| || | ||| ||||||
Sbjct 126789438 TGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 126789497
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || || || || ||||||||
Sbjct 126789498 TTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| || | |||||||| ||||| |||||||| || || ||||| ||||| | |
Sbjct 126789531 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789590
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | || ||||||||||| || ||| | || | ||||||||||| ||
Sbjct 126789591 AGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789650
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||| || ||||||| || || | ||| || |||| ||||||
Sbjct 126789651 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 126789710
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|| | ||| |||||||| || || | || || ||||| || ||||||
Sbjct 126789711 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCATT 126789758
Score = 109 bits (120), Expect = 5e-19
Identities = 167/237 (70%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | ||||||| || | |||||||| || || ||||| ||||| |
Sbjct 116540583 CCACCTCACAGGCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAG 116540642
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| | ||| | |||||||||||||||||| || | || || | ||||||||| |
Sbjct 116540643 AGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAGG 116540702
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||| || ||| || | | | || ||||||||||||
Sbjct 116540703 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACCGGGCTCCACC 116540762
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184
|| | ||| ||||||||||| || | || || | ||| || ||||| | ||| |||
Sbjct 116540763 TCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCATCTCTGAGTCT 116540819
>seq2
Length=114371477
Score = 122 bits (134), Expect = 7e-23
Identities = 157/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| || ||||| || || ||||| ||||| | || || || | ||
Sbjct 110580047 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 110579988
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || ||||||||||| || | ||||||||| ||
Sbjct 110579987 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 110579928
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | ||| || |||| ||||||| || | ||| ||||||
Sbjct 110579927 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 110579868
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
|||||||| | ||||| || || || ||||||||||
Sbjct 110579867 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTGA 110579831
>seq3
Length=247869975
Score = 107 bits (118), Expect = 2e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | || || | |||| || ||||| || || ||||||||||| |
Sbjct 140398639 CCACCTCTCAGACACAGGACTAGGTGCAGGGTCGACTCTTTCTGGATGTTATAGTCAGAA 140398698
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || || | || |||| ||| ||| | ||| | || || |||||||||||| ||
Sbjct 140398699 TGAGTGCGGTCATCTTCCACCTGCTTGACTGCAAAGATGAGCCTCTGCTGGTCCGGGGTA 140398758
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||| || |||||| ||||| | ||| || || | ||||||| |
Sbjct 140398759 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCCCTGGGCTCCACT 140398818
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
|| | || ||||||||||| ||| | || || || || || ||||||||||
Sbjct 140398819 TCAAGGGCAATGGTCTTGCTGGTAAGGGTCTTCACGAAGATCTGCATTTTGA 140398870
>seq9
Length=144709823
Score = 98.7 bits (108), Expect = 8e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| | ||||||| |||| ||||||||| || || ||||| ||||| |
Sbjct 122689512 CCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 122689453
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||||||||||||||||||| || || | ||||||||| ||
Sbjct 122689452 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGGG 122689393
Query 21069 ACGCCTTCCTTGTC 21082
| ||| ||||||||
Sbjct 122689392 ATGCCCTCCTTGTC 122689379
>seq17
Length=90481686
Score = 89.7 bits (98), Expect = 4e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017
|| || | ||| | ||| | ||| |||||||||||||| || ||||| | || || |
Sbjct 60459958 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGT 60460017
Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077
| || |||||||| ||||| ||| | || ||||||||||| || || | ||||||
Sbjct 60460018 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 60460077
Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137
|| || |||||| || || | | | ||||| ||| || || | |||
Sbjct 60460078 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTG 60460137
Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|||||||| || || | ||||| || || || |||||||||
Sbjct 60460138 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 60460179
>seq1
Length=229774977
Score = 89.7 bits (98), Expect = 4e-13
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| ||||| || || ||||| ||||| | || || | | || || ||||| ||||
Sbjct 198269202 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACAGCCATCTTCTAGCTGCATGCCT 198269261
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || || ||||||||||| | | | ||||||||| || ||| || |||
Sbjct 198269262 GCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTC 198269321
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || |||| ||||||| || | ||| ||||||||||| || | ||
Sbjct 198269322 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 198269381
Query 21159 TTGACAAATATTTGCATTTTGA 21180
|| || || || ||||||||||
Sbjct 198269382 TTCACGAAGATCTGCATTTTGA 198269403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422206327078184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |