Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq13 122 7e-23 seq2 122 7e-23 seq3 107 2e-18 seq9 98.7 8e-16 seq17 89.7 4e-13 seq1 89.7 4e-13 >seq13 Length=135337776 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| ||||| | |||||| | | || Sbjct 126789318 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 126789377 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| || | |||||||||||| Sbjct 126789378 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 126789437 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| ||| || | ||| || |||| |||||| || | ||| |||||| Sbjct 126789438 TGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 126789497 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || |||||||| Sbjct 126789498 TTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | |||||||| ||||| |||||||| || || ||||| ||||| | | Sbjct 126789531 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789590 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| | || | ||||||||||| || Sbjct 126789591 AGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789650 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || ||||||| || || | ||| || |||| |||||| Sbjct 126789651 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 126789710 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| |||||||| || || | || || ||||| || |||||| Sbjct 126789711 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCATT 126789758 Score = 109 bits (120), Expect = 5e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| || | |||||||| || || ||||| ||||| | Sbjct 116540583 CCACCTCACAGGCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAG 116540642 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || | ||| | |||||||||||||||||| || | || || | ||||||||| | Sbjct 116540643 AGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAGG 116540702 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | | | || |||||||||||| Sbjct 116540703 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACCGGGCTCCACC 116540762 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 || | ||| ||||||||||| || | || || | ||| || ||||| | ||| ||| Sbjct 116540763 TCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCATCTCTGAGTCT 116540819 >seq2 Length=114371477 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| ||||| | || || || | || Sbjct 110580047 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 110579988 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| || | ||||||||| || Sbjct 110579987 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 110579928 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| || | ||| |||||| Sbjct 110579927 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 110579868 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||| | ||||| || || || |||||||||| Sbjct 110579867 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTGA 110579831 >seq3 Length=247869975 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | |||| || ||||| || || ||||||||||| | Sbjct 140398639 CCACCTCTCAGACACAGGACTAGGTGCAGGGTCGACTCTTTCTGGATGTTATAGTCAGAA 140398698 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || |||| ||| ||| | ||| | || || |||||||||||| || Sbjct 140398699 TGAGTGCGGTCATCTTCCACCTGCTTGACTGCAAAGATGAGCCTCTGCTGGTCCGGGGTA 140398758 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || |||||| ||||| | ||| || || | ||||||| | Sbjct 140398759 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCCCTGGGCTCCACT 140398818 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | || ||||||||||| ||| | || || || || || |||||||||| Sbjct 140398819 TCAAGGGCAATGGTCTTGCTGGTAAGGGTCTTCACGAAGATCTGCATTTTGA 140398870 >seq9 Length=144709823 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| ||||||||| || || ||||| ||||| | Sbjct 122689512 CCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 122689453 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||||||||||||| || || | ||||||||| || Sbjct 122689452 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGGG 122689393 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 122689392 ATGCCCTCCTTGTC 122689379 >seq17 Length=90481686 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 || || | ||| | ||| | ||| |||||||||||||| || ||||| | || || | Sbjct 60459958 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGT 60460017 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | || |||||||| ||||| ||| | || ||||||||||| || || | |||||| Sbjct 60460018 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 60460077 Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137 || || |||||| || || | | | ||||| ||| || || | ||| Sbjct 60460078 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTG 60460137 Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||||||| || || | ||||| || || || ||||||||| Sbjct 60460138 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 60460179 >seq1 Length=229774977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || || ||||| ||||| | || || | | || || ||||| |||| Sbjct 198269202 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACAGCCATCTTCTAGCTGCATGCCT 198269261 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| | | | ||||||||| || ||| || ||| Sbjct 198269262 GCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTC 198269321 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||||||| || | ||| ||||||||||| || | || Sbjct 198269322 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 198269381 Query 21159 TTGACAAATATTTGCATTTTGA 21180 || || || || |||||||||| Sbjct 198269382 TTCACGAAGATCTGCATTTTGA 198269403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422206327078184