Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13 118 9e-22 seq8 111 1e-19 seq17 105 6e-18 seq15 100 2e-16 seq10 96.9 3e-15 seq9 89.7 4e-13 seq4 84.2 2e-11 >seq13 Length=135337776 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| || || || || ||| || Sbjct 126789548 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTC 126789607 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||||||||| || |||| | | |||||| || ||||| ||||| ||||| ||| Sbjct 126789608 CAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTG 126789667 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| |||||| || ||| ||||||| ||| | || || Sbjct 126789668 GATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 126789727 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || ||||| |||||||| Sbjct 126789728 ACCAGTCAGAGTCTTCACAAAGATCTGCAT 126789757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || ||||| || || | | || | ||| Sbjct 116540597 CAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAGAGACTGTGGCCATC 116540656 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || | | || |||| |||||| || || | |||||||||||||| Sbjct 116540657 CTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTC 116540716 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| ||| || | || | |||||| | ||| ||||| | ||| | || Sbjct 116540717 TTGGATTTTAGCTTTGACATTCTCAATGGTGTCACCGGGCTCCACCTCAAGGGTGATGGT 116540776 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || | ||| |||||||| Sbjct 116540777 CTTGCCCGTGAGGGTGTTCATAAAGATCTGCAT 116540809 >seq8 Length=162613886 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 |||||||| || |||||| | || | |||||| |||||| |||||||| || || Sbjct 25941863 GACTCTTTCTGGATGTTGCAGTCTAAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCA 25941922 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | || ||||| ||||| || | || ||||||||||||||| |||||| || || Sbjct 25941923 AATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACA 25941982 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || |||||| || ||||||||||| ||| | || ||||| || || || || Sbjct 25941983 TTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTC 25942042 Query 118725 ACAAAAATCTGCAT 118738 ||||| |||||||| Sbjct 25942043 ACAAAGATCTGCAT 25942056 >seq17 Length=90481686 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| | || | |||||||| |||||||| ||||| || || ||| || Sbjct 60459960 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 60460019 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| || ||||| |||| || | ||||||||| ||||| || || ||||| Sbjct 60460020 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 60460079 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || || || || || | ||| | || |||| | || ||||||| ||| | Sbjct 60460080 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 60460139 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||||||||| Sbjct 60460140 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 60460175 >seq15 Length=107357366 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || || || |||||||| || |||||||| | | |||| | ||| Sbjct 57005325 CAGCACCAGGTTGAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCATC 57005266 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||| |||| | || | || ||| ||||||| || || || || ||||||||||| Sbjct 57005265 CTCCAGCCGTTTCCTAGAAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 57005206 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| ||| || | | | |||||| ||| || |||||| | ||| | || Sbjct 57005205 CTGAATTTTGGTTTTGACATTCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGGT 57005146 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||||||| Sbjct 57005145 CTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 57005113 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || |||||||| || ||||| || || | ||| || |||||| Sbjct 20294780 CACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTACGGCCATCCTC 20294721 Query 118589 GAGCTGTTT-TCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | |||||| | || | | || ||| ||||||| || || || |||||||||||||| Sbjct 20294720 CAACTGTTTGTTCA-CAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCGT 20294662 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || ||| || | ||| |||||| | || |||||| | ||| | |||| Sbjct 20294661 GGATCTTGGCTTTGACATTTTCACTGGTGTCACTTGGCTGGACCTCAAGGGTGATGGTTT 20294602 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || |||||| | |||||||| Sbjct 20294601 TGCCTGTGAGGGTCTTTACAGAGATCTGCAT 20294571 >seq10 Length=138149186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| || | || ||| || | |||||| || | |||||| ||| Sbjct 22465141 CAGCACCAGGTGCGGGGTGGGCTGTTTCTGGACGTTGTAGTCTGAGAGAGTGCGGCCATC 22465082 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| | || | || |||||||||| || || || || ||||||||||| Sbjct 22465081 CTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTTGTCAGGGGGGATACCCTCCTTGTC 22465022 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| | || | || | |||||| || ||||||||| | ||| | || Sbjct 22465021 TTGAATTTTCGCACTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 22464962 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||||||| Sbjct 22464961 CTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 22464929 >seq9 Length=144709823 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || |||||||| || | |||||| ||| Sbjct 122689498 CAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 122689439 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || || ||||||||||| || || || |||||||||||||| Sbjct 122689438 CTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 122689379 Query 118646 TGTAATTTT 118654 |||||| Sbjct 122689378 CTGAATTTT 122689370 >seq4 Length=205426864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| | |||||| | || | ||| || ||| Sbjct 27700357 CAGCACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGCAGTCTGAGAGAGTTCGGCCATC 27700298 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| ||||| || ||| ||||||| || || || || || |||||||| Sbjct 27700297 CTCCAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACC-TCCTTGTC 27700239 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || | |||||| | || ||| || | || | || Sbjct 27700238 TTGAATTTTGGCTTTCACATTCTCAATGGTGTCACTTGGCTTGACGTCAAGAGTGATGGT 27700179 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 ||||| || || || || ||||| |||||| Sbjct 27700178 CTTGCCCGTGAGGGTCTTCACAAAGATCTGC 27700148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433776078197608