Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7 102 1e-16 seq20 96.9 5e-15 seq17 93.3 6e-14 seq18 86.0 9e-12 seq8 86.0 9e-12 >seq7 Length=173848474 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||| | || || || Sbjct 115442973 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAGA 115442915 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| ||||||||||| |||| |||||||||||| ||||| Sbjct 115442914 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 115442855 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 115442854 AATTCCTTCCTTATCCTG 115442837 >seq20 Length=64411610 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| | || ||||||| || |||| || ||| ||| | ||| Sbjct 58280982 TTCCTTCTGGATGTTATGGA-GAGTAGCTCCAAGGTCTGGCTTGGCTGCAAAACACTTTG 58281040 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||||| | |||||||| || | || |||||||||||||||||||| || || || | | Sbjct 58281041 TTGATGTAGGAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 58281100 Query 10549 TTAATCATTCTAATGAAGATTTTATAAT-AAATAGAGGAGATAGAATATCTCAATTAATA 10607 ||||| || || ||| | ||| | | ||| | ||| ||| |||| | || | || Sbjct 58281101 TTAATTTTTGCAAAGAAAAGTTTGAAGTCAAAAAAAGGTGATCGAATTGCACAGCTCATT 58281160 Query 10608 TGTGAA-AAAATTTTATATCCTAAAAT 10633 |||||| | |||| ||||| |||| Sbjct 58281161 TGTGAACGGATTTTTTTATCCAGAAAT 58281187 >seq17 Length=90481686 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 60459949 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 60460007 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || |||||||| |||| ||| |||||||| ||||| Sbjct 60460008 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 60460067 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 60460068 AATTCCTTCCTTATCCTG 60460085 >seq18 Length=83442489 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || ||||| | ||||| ||||| ||||| || | || Sbjct 46140275 CCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGAC 46140334 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | ||| || | ||| || |||||||| ||| |||||||||||| |||||| Sbjct 46140335 AAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 46140394 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 46140395 ATTCCTTCCTTATCCTG 46140411 >seq8 Length=162613886 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTA-GATTCTTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||| | | |||| || || || || || || Sbjct 160503471 CCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGA-ATGTTGTAGTCAGA 160503413 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || | | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 160503412 CAG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 160503355 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 160503354 AATTCCTTCCTTATCCTG 160503337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743430912622080