Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq7 102 1e-16
seq20 96.9 5e-15
seq17 93.3 6e-14
seq18 86.0 9e-12
seq8 86.0 9e-12
>seq7
Length=173848474
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | |||||| || ||| || ||| | || || ||
Sbjct 115442973 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAGA 115442915
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| ||||||||||| |||| |||||||||||| |||||
Sbjct 115442914 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 115442855
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 115442854 AATTCCTTCCTTATCCTG 115442837
>seq20
Length=64411610
Score = 96.9 bits (106), Expect = 5e-15
Identities = 148/207 (71%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488
||||| |||||||||| | || ||||||| || |||| || ||| ||| | |||
Sbjct 58280982 TTCCTTCTGGATGTTATGGA-GAGTAGCTCCAAGGTCTGGCTTGGCTGCAAAACACTTTG 58281040
Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548
||||| | |||||||| || | || |||||||||||||||||||| || || || | |
Sbjct 58281041 TTGATGTAGGAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 58281100
Query 10549 TTAATCATTCTAATGAAGATTTTATAAT-AAATAGAGGAGATAGAATATCTCAATTAATA 10607
||||| || || ||| | ||| | | ||| | ||| ||| |||| | || | ||
Sbjct 58281101 TTAATTTTTGCAAAGAAAAGTTTGAAGTCAAAAAAAGGTGATCGAATTGCACAGCTCATT 58281160
Query 10608 TGTGAA-AAAATTTTATATCCTAAAAT 10633
|||||| | |||| ||||| ||||
Sbjct 58281161 TGTGAACGGATTTTTTTATCCAGAAAT 58281187
>seq17
Length=90481686
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || ||
Sbjct 60459949 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 60460007
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | || || |||||||| |||| ||| |||||||| |||||
Sbjct 60460008 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 60460067
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 60460068 AATTCCTTCCTTATCCTG 60460085
>seq18
Length=83442489
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||||| || || ||||| | ||||| ||||| ||||| || | ||
Sbjct 46140275 CCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGAC 46140334
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||| | ||| || | ||| || |||||||| ||| |||||||||||| ||||||
Sbjct 46140335 AAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 46140394
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| ||||| ||
Sbjct 46140395 ATTCCTTCCTTATCCTG 46140411
>seq8
Length=162613886
Score = 86.0 bits (94), Expect = 9e-12
Identities = 104/138 (75%), Gaps = 4/138 (3%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTA-GATTCTTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | |||| | | |||| || || || || || ||
Sbjct 160503471 CCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGA-ATGTTGTAGTCAGA 160503413
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| | | | ||| || | ||| || |||||||| |||| |||||||||||| |||||
Sbjct 160503412 CAG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 160503355
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 160503354 AATTCCTTCCTTATCCTG 160503337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743430912622080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |