Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 116 2e-21 seq9 100 2e-16 seq13 98.7 6e-16 seq4 87.8 1e-12 seq1 87.8 1e-12 seq15 86.0 4e-12 seq3 82.4 5e-11 >seq2 Length=114371477 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || |||||||| ||||||||||| || Sbjct 110580062 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 110580003 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| || Sbjct 110580002 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 110579943 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | || | || | | || || Sbjct 110579942 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 110579883 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| || |||||||| ||||||||||| Sbjct 110579882 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 110579836 >seq9 Length=144709823 Score = 100 bits (110), Expect = 2e-16 Identities = 159/231 (69%), Gaps = 18/231 (8%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | ||| |||||||| ||||||||||| || Sbjct 122689512 CCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 122689453 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| ||||| || | || || ||||||||||| || Sbjct 122689452 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGGG 122689393 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| || ||||| | | | ||| |||| Sbjct 122689392 ATGCCCTCCTTGTC--CTGAATTTTGGCGTTGCTGGGC----------------TCGATC 122689351 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| ||||| || |||||||||||||||||| || Sbjct 122689350 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATCTCT 122689300 >seq13 Length=135337776 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| || || |||||||| ||||||||||| ||||| ||| | || Sbjct 126789546 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 126789605 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || || | || ||||||||| || | || ||||| || Sbjct 126789606 TCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 126789665 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | || || || | |||||||| Sbjct 126789666 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 126789725 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || ||||| ||||||||||||||||| Sbjct 126789726 TTACCAGTCAGAGTCTTCACAAAGATCTGCAT 126789757 Score = 89.7 bits (98), Expect = 3e-13 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||||||||| | || |||||||| ||||| ||||| || Sbjct 116540583 CCACCTCACAGGCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAG 116540642 Query 34223 AG-CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || ||| || | || |||| ||| ||||| | || || || | ||||||||| | | | Sbjct 116540643 AGACTG-TGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAG 116540701 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339 | | || ||||||||| || ||| ||||| | || | || | || | || Sbjct 116540702 G-ATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATGGTGTCACCGGGCTCC 116540759 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || || | |||||||| ||||| ||||| || |||| ||||||||||||| || Sbjct 116540760 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCATCTCT 116540813 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||| ||| | ||| |||||||| ||||||||||| ||||| || | || Sbjct 126789317 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 126789376 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || || || || | || ||||||||| || | || |||||||| Sbjct 126789377 TTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 126789436 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||| |||||||| | | | || | || | | ||||| || | ||||||| Sbjct 126789437 TTGGATC-TTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 126789495 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | ||||| ||||| || ||||| ||||| |||||| Sbjct 126789496 TCTTGCCAGTGAGTGTCTTCACGAAGATTTGCATC 126789530 >seq4 Length=205426864 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 34171 CAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACG 34230 ||| | |||||||||||| | || |||||| | |||||| |||| || || || Sbjct 27700363 CAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGCAGTCTGAGAGAGTTCG 27700304 Query 34231 GTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTC 34290 | | || |||| ||| ||||| || | || || |||||||||| || | | ||| Sbjct 27700303 GCCATCCTCCAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGATAC-CTC 27700245 Query 34291 CTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCG 34349 |||||| || ||| ||||| | || | || | || | | | |||||| | | Sbjct 27700244 CTTGTCTTGAAT-TTTGGCTTTCACATTCTCAATGGTGTCACTTGGCTTGACGTCAAGAG 27700186 Query 34350 TGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 ||||||| ||||| ||||| || ||||||||||||||| || || Sbjct 27700185 TGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCGTCTCT 27700142 >seq1 Length=229774977 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || || | | || || | |||| ||||||| || Sbjct 198269208 TCTTTCTGGATGTTGTAGTCAGAAAGAGTACAGCCATCTTCTAGCTGCATGCCTGCAAAG 198269267 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| |||||||||| | | | || ||||| || || || ||| | || Sbjct 198269268 ATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTCACATTT 198269327 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || || | |||||||| ||||| || || || ||||| Sbjct 198269328 TCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 198269387 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 198269388 AAGATCTGCAT 198269398 >seq15 Length=107357366 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||| ||||| || || |||| | || |||||||| ||| | || Sbjct 20294761 TCTTTCTGGATGTTATAGTCTGAAAGAGTACGGCCATCCTCCAACTGTTTGTTCACAAAT 20294702 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || |||||||||| || | || |||||||||| ||||| ||||| | || Sbjct 20294701 ATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCGTGGATCTTG-GCTTTGACATT 20294643 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | | || | | | ||| || | |||||||||||||| ||||| || || || Sbjct 20294642 TTCACTGGTGTCACTTGGCTGGACCTCAAGGGTGATGGTTTTGCCTGTGAGGGTCTTTAC 20294583 Query 34378 AAAGATCTGCATCGCT 34393 | ||||||||||| || Sbjct 20294582 AGAGATCTGCATCTCT 20294567 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | || |||||||| ||||||||| | || Sbjct 57005339 CCACCTCGCAGGCGCAGCACCAGGTTGAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAG 57005280 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| | | || | | || || || |||||||||| || Sbjct 57005279 AGAGTGTGGCCATCCTCCAGCCGTTTCCTAGAAAATATCAGATGCTGCTGGTCAGGTGGG 57005220 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTA--TCGAATCGGTCGATTCGA 34340 | | ||||||||| || ||||| ||| || ||| | | ||||| | | || Sbjct 57005219 ATACCCTCCTTGTC--CTGAATTTTGGTTTTGACATTCTAAATGGTGTCGGTGGGCTTGA 57005162 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | || | |||||||| ||||| ||||| || |||||||||||||||||| || Sbjct 57005161 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCT 57005109 >seq3 Length=247869975 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/223 (68%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || |||||||| ||||||||||| || || ||| | || Sbjct 140398415 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 140398474 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC----------GACGGGCACGC 34286 |||| |||||||||||| || ||||||| ||||||||| | ||| || Sbjct 140398475 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGC 140398534 Query 34287 TCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCA 34346 || || || ||||| ||| | || | || | || | | || || |||| Sbjct 140398535 CTTCTTTATCCTGGATCTTGGCCTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCA 140398594 Query 34347 CCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||| || || || ||||| ||||||||||| Sbjct 140398595 GGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 140398637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323031546741440