Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq24 248 8e-61 seq9 111 1e-19 seq2 98.7 9e-16 seq1 91.5 1e-13 >seq24 Length=155392059 Score = 248 bits (274), Expect = 8e-61 Identities = 527/781 (67%), Gaps = 18/781 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| || || | ||| ||| |||||| | |||||| ||| ||| Sbjct 44583431 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44583490 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||| | |||||||| || || |||| | ||||||||| | Sbjct 44583491 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44583545 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 || |||| ||||| || | | | | | || | |||| ||||| || | Sbjct 44583546 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44583605 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||| || |||||||| || || || || ||||||| | || ||||| || || | | Sbjct 44583606 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44583665 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 | ||||| | || || || | || | || |||||| | ||| || | || ||||| | Sbjct 44583666 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44583725 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240 |||| ||| || | | || ||||| | | |||||| ||||| | |||||| Sbjct 44583726 CTCTCACTTT-CTCCT---CCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44583781 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || ||||| || || || ||| Sbjct 44583782 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44583841 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| |||||||||||||| || ||| Sbjct 44583842 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCT 44583901 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| || || || || | || ||||| || || || ||| | | | |||| Sbjct 44583902 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC--CCAATCC 44583959 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | ||||||| ||| | || ||||| ||| | || || ||||| || | Sbjct 44583960 AGCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGA 44584018 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | ||||||||| |||| || ||||| || || || | |||||||||||| | Sbjct 44584019 GAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 44584078 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||||| || || || || ||||| || || | ||||| | || || | Sbjct 44584079 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 44584138 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 || | ||| | || | || ||||| || ||||| ||||| || |||||||| | Sbjct 44584139 CTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGA 44584198 Query 16659 A 16659 | Sbjct 44584199 A 44584199 Score = 111 bits (122), Expect = 1e-19 Identities = 302/458 (66%), Gaps = 7/458 (2%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| | ||| || || || || || || || || | || || |||||||| || Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| |||||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903 Query 16355 ATACCTTCAACTGCGGCAAA---TGCAACCAA-TCGCTCACCGTACGTTCTAtttttact 16410 | | ||| || |||||| |||| ||| || || || | || | ||| | Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 143817843 Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470 | ||||| ||||| ||| || | || |||||| ||| | || || || Sbjct 143817842 CCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAG-GCATCGTTTCAATGGC 143817784 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 | | || | | | | |||||||| ||||| ||||| || || || || | | ||| Sbjct 143817783 ACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATAT--GTGTCAATAAGGAGATTATT 143817726 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 ||||| ||||| || || || || || || || || ||||| ||||| | ||| | Sbjct 143817725 TATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGT 143817666 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 || | ||||| ||| ||| | |||||||| | | ||| ||||| | || Sbjct 143817665 AATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGC 143817606 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAttttttt 16688 |||||| || || || || || ||||||| | ||| Sbjct 143817605 TGCAAATAAAGCCAGAATATGGGATATAAAATATCTTT 143817568 >seq9 Length=144709823 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | || |||||||| | Sbjct 101019698 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 101019757 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 101019758 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 101019817 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 101019818 CCATAAAATCAAAAGGATTTTCTG 101019841 >seq2 Length=114371477 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10280333 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 10280332 ACAACACGTTCACC 10280319 >seq1 Length=229774977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| || ||||| || || || | |||||||||||| ||||| | | Sbjct 140699687 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 140699746 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607 | ||||| || || || || |||| || || | ||||| | || || ||||| | Sbjct 140699747 TTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 140699806 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 ||| | || | |||||||| || ||||| ||||| || |||||||| || || || Sbjct 140699807 TAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 140699864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462452601896400