Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq24 248 8e-61
seq9 111 1e-19
seq2 98.7 9e-16
seq1 91.5 1e-13
>seq24
Length=155392059
Score = 248 bits (274), Expect = 8e-61
Identities = 527/781 (67%), Gaps = 18/781 (2%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||| || ||| || || | ||| ||| |||||| | |||||| ||| |||
Sbjct 44583431 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44583490
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
| ||||| || | |||||| | |||||||| || || |||| | ||||||||| |
Sbjct 44583491 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44583545
Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064
|| |||| ||||| || | | | | | || | |||| ||||| || |
Sbjct 44583546 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44583605
Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124
||| || |||||||| || || || || ||||||| | || ||||| || || | |
Sbjct 44583606 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44583665
Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184
| ||||| | || || || | || | || |||||| | ||| || | || ||||| |
Sbjct 44583666 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44583725
Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240
|||| ||| || | | || ||||| | | |||||| ||||| | ||||||
Sbjct 44583726 CTCTCACTTT-CTCCT---CCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44583781
Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300
|||||||| || || || || || || || || | || || ||||| || || || |||
Sbjct 44583782 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44583841
Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360
|| ||||||||||| || | ||| ||||| | ||||| |||||||||||||| || |||
Sbjct 44583842 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCT 44583901
Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418
|| ||||| || || || || | || ||||| || || || ||| | | | ||||
Sbjct 44583902 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC--CCAATCC 44583959
Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478
| ||||||| ||| | || ||||| ||| | || || ||||| || |
Sbjct 44583960 AGCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGA 44584018
Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538
| | | ||||||||| |||| || ||||| || || || | |||||||||||| |
Sbjct 44584019 GAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 44584078
Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598
|||| || || ||||| || || || || ||||| || || | ||||| | || || |
Sbjct 44584079 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 44584138
Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658
|| | ||| | || | || ||||| || ||||| ||||| || |||||||| |
Sbjct 44584139 CTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGA 44584198
Query 16659 A 16659
|
Sbjct 44584199 A 44584199
Score = 111 bits (122), Expect = 1e-19
Identities = 302/458 (66%), Gaps = 7/458 (2%)
Strand=Plus/Minus
Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294
|||||||| | ||| || || || || || || || || | || || |||||||| ||
Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963
Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354
|| ||||| |||||| |||| || | ||| ||||| ||||| ||||||||||||||
Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903
Query 16355 ATACCTTCAACTGCGGCAAA---TGCAACCAA-TCGCTCACCGTACGTTCTAtttttact 16410
| | ||| || |||||| |||| ||| || || || | || | ||| |
Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 143817843
Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470
| ||||| ||||| ||| || | || |||||| ||| | || || ||
Sbjct 143817842 CCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAG-GCATCGTTTCAATGGC 143817784
Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530
| | || | | | | |||||||| ||||| ||||| || || || || | | |||
Sbjct 143817783 ACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATAT--GTGTCAATAAGGAGATTATT 143817726
Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590
||||| ||||| || || || || || || || || ||||| ||||| | ||| |
Sbjct 143817725 TATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGT 143817666
Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650
|| | ||||| ||| ||| | |||||||| | | ||| ||||| | ||
Sbjct 143817665 AATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGC 143817606
Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAttttttt 16688
|||||| || || || || || ||||||| | |||
Sbjct 143817605 TGCAAATAAAGCCAGAATATGGGATATAAAATATCTTT 143817568
>seq9
Length=144709823
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || || |||||| | | | || |||||||| |
Sbjct 101019698 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 101019757
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct 101019758 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 101019817
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||||||||||| ||
Sbjct 101019818 CCATAAAATCAAAAGGATTTTCTG 101019841
>seq2
Length=114371477
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || |||||||| || || ||||| ||||||||||| ||
Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| ||
Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10280333
Query 16379 ACCAATCGCTCACC 16392
|| | || |||||
Sbjct 10280332 ACAACACGTTCACC 10280319
>seq1
Length=229774977
Score = 91.5 bits (100), Expect = 1e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547
|||||||| |||| || ||||| || || || | |||||||||||| ||||| | |
Sbjct 140699687 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 140699746
Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607
| ||||| || || || || |||| || || | ||||| | || || ||||| |
Sbjct 140699747 TTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 140699806
Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665
||| | || | |||||||| || ||||| ||||| || |||||||| || || ||
Sbjct 140699807 TAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 140699864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462452601896400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |