Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 9e-15 seq13 93.3 3e-14 seq9876 91.5 1e-13 seq18 82.4 6e-11 >seq2 Length=114371477 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 110580047 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 110579988 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | |||||||||||| Sbjct 110579987 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 110579928 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| |||| ||||||| | Sbjct 110579927 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 110579868 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||| | ||||| || || || |||||||| Sbjct 110579867 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 110579833 >seq13 Length=135337776 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 126789318 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 126789377 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || || | ||||||||| || Sbjct 126789378 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 126789437 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | | | ||||||| ||||||| |||| ||||||| | Sbjct 126789438 TGGATCT-TTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 126789496 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||| || || || |||||||| Sbjct 126789497 CTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| | || || ||||| || ||||||||||| | || || || |||| Sbjct 126789546 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 126789605 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || || | |||||||||||| Sbjct 126789606 TCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 126789665 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 126789666 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 126789725 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||| || || ||||| || |||||| Sbjct 126789726 TTACCAGTCAGAGTCTTCACAAAGATCTGCATT 126789758 >seq9876 Length=376000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || || ||||| || ||||||||||| | | | | |||| Sbjct 278164 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCAGCCATCT 278105 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || | || || || ||| |||||| ||||| Sbjct 278104 TCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGATTGCCTTCTTTATCT 278045 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | | | | |||| ||| |||||| ||||| ||||||| | Sbjct 278044 TGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGATC 277985 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||| | ||||| || || || |||||||| Sbjct 277984 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 277950 >seq18 Length=83442489 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || ||||||||| Sbjct 46140260 TTCCTTTTCTTAGCACCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGA 46140319 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 || |||||| | | || || | | |||||||| ||| ||||| ||| |||| ||||| Sbjct 46140320 ATATTGTAGCCAGACAAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTT 46140379 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 || ||||| || | ||||||||||| Sbjct 46140380 TGCTGATCAGGAGGAATTCCTTCCTTATC 46140408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379296500678130