Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq2 95.1 9e-15
seq13 93.3 3e-14
seq9876 91.5 1e-13
seq18 82.4 6e-11
>seq2
Length=114371477
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || ||||| || ||||||||||| | | || | ||||
Sbjct 110580047 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 110579988
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || || | ||||||||||||
Sbjct 110579987 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 110579928
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | ||| || | | | | ||||||| |||||| |||| ||||||| |
Sbjct 110579927 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 110579868
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||||||| | ||||| || || || ||||||||
Sbjct 110579867 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 110579833
>seq13
Length=135337776
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || ||||| || ||||||||||| | || || | ||||
Sbjct 126789318 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 126789377
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| ||||| || ||| |||| | || || || || || | ||||||||| ||
Sbjct 126789378 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 126789437
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|| | |||| ||||| | | | ||||||| ||||||| |||| ||||||| |
Sbjct 126789438 TGGATCT-TTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 126789496
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| || | ||| || || || ||||||||
Sbjct 126789497 CTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| | || || ||||| || ||||||||||| | || || || ||||
Sbjct 126789546 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 126789605
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| ||||| || ||| |||| | || || || || || | ||||||||||||
Sbjct 126789606 TCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 126789665
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | | |||||| | | | ||||||| |||||| || | ||||||| |
Sbjct 126789666 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 126789725
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| || |||| || || ||||| || ||||||
Sbjct 126789726 TTACCAGTCAGAGTCTTCACAAAGATCTGCATT 126789758
>seq9876
Length=376000
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| || || || || ||||| || ||||||||||| | | | | ||||
Sbjct 278164 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCAGCCATCT 278105
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || | || || || ||| |||||| |||||
Sbjct 278104 TCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGATTGCCTTCTTTATCT 278045
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|||| |||||| | | | | |||| ||| |||||| ||||| ||||||| |
Sbjct 278044 TGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGATC 277985
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||||||| | ||||| || || || ||||||||
Sbjct 277984 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 277950
>seq18
Length=83442489
Score = 82.4 bits (90), Expect = 6e-11
Identities = 108/149 (72%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || |||||||||
Sbjct 46140260 TTCCTTTTCTTAGCACCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGA 46140319
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
|| |||||| | | || || | | |||||||| ||| ||||| ||| |||| |||||
Sbjct 46140320 ATATTGTAGCCAGACAAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTT 46140379
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232
|| ||||| || | |||||||||||
Sbjct 46140380 TGCTGATCAGGAGGAATTCCTTCCTTATC 46140408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379296500678130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |